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Fragment-based drug design is a promising strategy leveraging the binding of small chemical moieties that can efficiently guide drug discovery. The initial step of fragment identification remains challenging, as fragments often bind weakly…

Biomolecules · Quantitative Biology 2025-09-17 Rebecca Manuela Neeser , Ilia Igashov , Arne Schneuing , Michael Bronstein , Philippe Schwaller , Bruno Correia

Modeling the interaction between proteins and ligands and accurately predicting their binding structures is a critical yet challenging task in drug discovery. Recent advancements in deep learning have shown promise in addressing this…

Machine Learning · Computer Science 2024-01-10 Qizhi Pei , Kaiyuan Gao , Lijun Wu , Jinhua Zhu , Yingce Xia , Shufang Xie , Tao Qin , Kun He , Tie-Yan Liu , Rui Yan

Accurate identification of antiviral peptides (AVPs) is critical for accelerating novel drug development. However, current computational methods struggle to capture intricate sequence dependencies and effectively handle ambiguous,…

Machine Learning · Computer Science 2025-12-29 Xinru Wen , Weizhong Lin , Xuan Xiao

Existing open-vocabulary object detection (OVD) develops methods for testing unseen categories by aligning object region embeddings with corresponding VLM features. A recent study leverages the idea that VLMs implicitly learn compositional…

Computer Vision and Pattern Recognition · Computer Science 2024-12-25 Hojun Choi , Junsuk Choe , Hyunjung Shim

Quantitative analysis of microstructural features on the nanoscale, including precipitates, local chemical orderings (LCOs) or structural defects (e.g. stacking faults) plays a pivotal role in understanding the mechanical and physical…

With the explosive growth of web videos and emerging large-scale vision-language pre-training models, e.g., CLIP, retrieving videos of interest with text instructions has attracted increasing attention. A common practice is to transfer…

Computer Vision and Pattern Recognition · Computer Science 2023-08-22 Bo Fang , Wenhao Wu , Chang Liu , Yu Zhou , Yuxin Song , Weiping Wang , Xiangbo Shu , Xiangyang Ji , Jingdong Wang

Protein-ligand complex structures have been utilised to design benchmark machine learning methods that perform important tasks related to drug design such as receptor binding site detection, small molecule docking and binding affinity…

Biomolecules · Quantitative Biology 2021-08-26 Rishal Aggarwal , Akash Gupta , U Deva Priyakumar

Large-scale object detection datasets (e.g., MS-COCO) try to define the ground truth bounding boxes as clear as possible. However, we observe that ambiguities are still introduced when labeling the bounding boxes. In this paper, we propose…

Computer Vision and Pattern Recognition · Computer Science 2019-04-18 Yihui He , Chenchen Zhu , Jianren Wang , Marios Savvides , Xiangyu Zhang

Visual localization has traditionally been formulated as a pair-wise pose regression problem. Existing approaches mainly estimate relative poses between two images and employ a late-fusion strategy to obtain absolute pose estimates.…

Computer Vision and Pattern Recognition · Computer Science 2025-12-29 Tianchen Deng , Wenhua Wu , Kunzhen Wu , Guangming Wang , Siting Zhu , Shenghai Yuan , Xun Chen , Guole Shen , Zhe Liu , Hesheng Wang

We present the next generation of MobileNets based on a combination of complementary search techniques as well as a novel architecture design. MobileNetV3 is tuned to mobile phone CPUs through a combination of hardware-aware network…

Computer Vision and Pattern Recognition · Computer Science 2019-11-21 Andrew Howard , Mark Sandler , Grace Chu , Liang-Chieh Chen , Bo Chen , Mingxing Tan , Weijun Wang , Yukun Zhu , Ruoming Pang , Vijay Vasudevan , Quoc V. Le , Hartwig Adam

Motivation: Protein-ligand affinity prediction is an important part of structure-based drug design. It includes molecular docking and affinity prediction. Although molecular dynamics can predict affinity with high accuracy at present, it is…

Biomolecules · Quantitative Biology 2021-05-12 Yeji Wang , Shuo Wu , Yanwen Duan , Yong Huang

Image-text matching is gaining a leading role among tasks involving the joint understanding of vision and language. In literature, this task is often used as a pre-training objective to forge architectures able to jointly deal with images…

Computer Vision and Pattern Recognition · Computer Science 2022-08-01 Nicola Messina , Matteo Stefanini , Marcella Cornia , Lorenzo Baraldi , Fabrizio Falchi , Giuseppe Amato , Rita Cucchiara

Predicting the bioactivity of a ligand is one of the hardest and most important challenges in computer-aided drug discovery. Despite years of data collection and curation efforts by research organizations worldwide, bioactivity data remains…

Quantitative Methods · Quantitative Biology 2023-08-21 Lucian Chan , Marcel Verdonk , Carl Poelking

Evaluation is essential in image fusion research, yet most existing metrics are directly borrowed from other vision tasks without proper adaptation. These traditional metrics, often based on complex image transformations, not only fail to…

Computer Vision and Pattern Recognition · Computer Science 2026-04-06 Chunyang Cheng , Tianyang Xu , Xiao-Jun Wu , Tao Zhou , Hui Li , Zhangyong Tang , Josef Kittler

Video-text retrieval is an important yet challenging task in vision-language understanding, which aims to learn a joint embedding space where related video and text instances are close to each other. Most current works simply measure the…

Computer Vision and Pattern Recognition · Computer Science 2021-08-02 Peng Wu , Xiangteng He , Mingqian Tang , Yiliang Lv , Jing Liu

Accurately segmenting brain lesions in MRI scans is critical for providing patients with prognoses and neurological monitoring. However, the performance of CNN-based segmentation methods is constrained by the limited training set size.…

Image and Video Processing · Electrical Eng. & Systems 2023-07-06 Jiayu Huo , Yang Liu , Xi Ouyang , Alejandro Granados , Sebastien Ourselin , Rachel Sparks

Visual Place Recognition (VPR) has advanced significantly with high-capacity foundation models like DINOv2, achieving remarkable performance. Nonetheless, their substantial computational cost makes deployment on resource-constrained devices…

Computer Vision and Pattern Recognition · Computer Science 2025-12-16 Jaeyoon Kim , Yoonki Cho , Sung-Eui Yoon

In the past few years, numerous Deep Neural Network (DNN) models and frameworks have been developed to tackle the problem of real-time object detection from RGB images. Ordinary object detection approaches process information from the…

Computer Vision and Pattern Recognition · Computer Science 2020-08-18 Xiang Li , Yuan Tian , Fuyao Zhang , Shuxue Quan , Yi Xu

Humans can effectively find salient regions in complex scenes. Self-attention mechanisms were introduced into Computer Vision (CV) to achieve this. Attention Augmented Convolutional Network (AANet) is a mixture of convolution and…

Computer Vision and Pattern Recognition · Computer Science 2022-06-07 Runqing Zhang , Tianshu Zhu

Video Moment Retrieval (VMR) is a task to localize the temporal moment in untrimmed video specified by natural language query. For VMR, several methods that require full supervision for training have been proposed. Unfortunately, acquiring…

Computer Vision and Pattern Recognition · Computer Science 2023-10-10 Minuk Ma , Sunjae Yoon , Junyeong Kim , Youngjoon Lee , Sunghun Kang , Chang D. Yoo
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