Related papers: Smallest Suffixient Sets: Effectiveness, Resilienc…
This paper is concerned with practical implementations of approximate string dictionaries that allow edit errors. In this problem, we have as input a dictionary $D$ of $d$ strings of total length $n$ over an alphabet of size $\sigma$. Given…
Algorithms to find optimal alignments among strings, or to find a parsimonious summary of a collection of strings, are well studied in a variety of contexts, addressing a wide range of interesting applications. In this paper, we consider…
Ideally, the time that an incremental algorithm uses to process a change should be a function of the size of the change rather than, say, the size of the entire current input. Based on a formalization of ``the set of things changed'' by an…
A supersequence over a finite set is a sequence that contains as subsequence all permutations of the set. This paper defines an infinite array of methods to create supersequences of decreasing lengths. This yields the shortest known…
We report (to our knowledge) the first evaluation of Constraint Satisfaction as a computational framework for solving closest string problems. We show that careful consideration of symbol occurrences can provide search heuristics that…
We study the query complexity of exactly reconstructing a string from adaptive queries, such as substring, subsequence, and jumbled-index queries. Such problems have applications, e.g., in computational biology. We provide a number of new…
For a finite set $A\subset\mathbb{N}$ and $k\in \mathbb{N}$, let $\omega_k(A) = \sum_{i\in A, i\neq k}1$. For each $n\in \mathbb{N}$, define $$a_{k, n}\ =\ |\{E\subset \mathbb{N}\,:\, E = \emptyset\mbox{ or } \omega_k(E) < \min E\leqslant…
The classic string indexing problem is to preprocess a string S into a compact data structure that supports efficient pattern matching queries. Typical queries include existential queries (decide if the pattern occurs in S), reporting…
The (bitwise) complement $\overline{x}$ of a binary word $x$ is obtained by changing each $0$ in $x$ to $1$ and vice versa. An $\textit{antisquare}$ is a nonempty word of the form $x\, \overline{x}$. In this paper, we study infinite binary…
Recently, Cenzato et al.\ proposed a new text index, called the \emph{suffixient array}, which is a subset of the suffix array and supports locating a single pattern occurrence or finding its maximal exact matches (MEMs), assuming random…
A property $\Pi$ on a finite set $U$ is \emph{monotone} if for every $X \subseteq U$ satisfying $\Pi$, every superset $Y \subseteq U$ of $X$ also satisfies $\Pi$. Many combinatorial properties can be seen as monotone properties. The problem…
A lexicographic maximum of a set $X \subseteq \mathbb{R}^n$ is a vector in $X$ whose smallest component is as large as possible, and subject to that requirement, whose second smallest component is as large as possible, and so on for the…
We investigate connections between SAT (the propositional satisfiability problem) and combinatorics, around the minimum degree (number of occurrences) of variables in various forms of redundancy-free boolean conjunctive normal forms…
This paper investigates the approximability of the Longest Common Subsequence (LCS) problem. The fastest algorithm for solving the LCS problem exactly runs in essentially quadratic time in the length of the input, and it is known that under…
A set is called recurrent if its minimal automaton is strongly connected and birecurrent if it is recurrent as well as its reversal. We prove a series of results concerning birecurrent sets. It is already known that any birecurrent set is…
A square is the concatenation of a nonempty word with itself. A word has period p if its letters at distance p match. The exponent of a nonempty word is the quotient of its length over its smallest period. In this article we give a proof of…
The element distinctness problem takes as input a list $I$ of $n$ values from a totally ordered universe and the goal is to decide whether $I$ contains any duplicates. It is a well-studied problem with a classical worst-case $\Omega(n \log…
We introduce a new combinatorial structure: the superselector. We show that superselectors subsume several important combinatorial structures used in the past few years to solve problems in group testing, compressed sensing, multi-channel…
Suffix tree (and the closely related suffix array) are fundamental structures capturing all substrings of a given text essentially by storing all its suffixes in the lexicographical order. In some applications, we work with a subset of $b$…
The notion of \emph{string attractor} has recently been introduced in [Prezza, 2017] and studied in [Kempa and Prezza, 2018] to provide a unifying framework for known dictionary-based compressors. A string attractor for a word…