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Reaction-diffusion systems have been proposed as a model for pattern formation and morphogenesis. The Fickian diffusion typically employed in these constructions model the Brownian motion of particles. The biological and chemical elements…

Quantitative Methods · Quantitative Biology 2023-11-09 Siddhartha Srivastava , Krishna Garikipati

From infiltration of water into the soil during rainstorms to seasonal plant growth and death, the ecohydrological processes that are thought to be relevant to the formation of banded vegetation patterns in drylands occur across multiple…

Pattern Formation and Solitons · Physics 2020-06-24 Punit Gandhi , Sara Bonetti , Sarah Iams , Amilcare Porporato , Mary Silber

Vegetation in semi-arid environments self-organizes into striking spatial patterns -- bands, spots, labyrinths, and gaps -- with characteristic wavelengths on the order of tens to hundreds of meters. Existing reaction-diffusion models…

Pattern Formation and Solitons · Physics 2026-04-06 Chad M. Topaz

Reaction--diffusion mechanism are a robust paradigm that can be used to represent many biological and physical phenomena over multiple spatial scales. Applications include intracellular dynamics, the migration of cells and the patterns…

Quantitative Methods · Quantitative Biology 2021-01-01 Cameron A. Smith , Christian A. Yates

Assembly theory predicts that a distinguishing signature of life is its ability to produce complex molecules in abundance, opening new possibilities for life detection. Experimental validation of this approach has so far relied on abiotic…

Biological Physics · Physics 2025-09-08 Alexandre Champagne-Ruel , Christopher P. Kempes , Cole Mathis

Reaction-diffusion processes across layered media arise in several scientific domains such as pattern-forming E. coli on agar substrates, epidermal-mesenchymal coupling in development, and symmetry-breaking in cell polarisation. We develop…

Pattern Formation and Solitons · Physics 2020-09-18 Andrew L. Krause , Václav Klika , Jacob Halatek , Paul K. Grant , Thomas E. Woolley , Neil Dalchau , Eamonn A. Gaffney

Mathematical modelling of the evolution of the size-spectrum dynamics in aquatic ecosystems was discovered to be a powerful tool to have a deeper insight into impacts of human- and environmental driven changes on the marine ecosystem. In…

Analysis of PDEs · Mathematics 2024-01-02 Laura Kanzler , Benoit Perthame , Benoit Sarels

We study a chemotaxis system that includes two competitive prey and one predator species in a two-dimensional domain, where the movement of prey (resp. predators) is driven by chemicals secreted by predators (resp. prey), called mutually…

Analysis of PDEs · Mathematics 2025-08-19 Cordula Reisch , Bao-Ngoc Tran , Juan Yang

Spatial patterns are widely observed in numerous nonequilibrium natural systems, often undergoing complex transitions and bifurcations, thereby exhibiting significant importance in many physical and biological systems such as embryonic…

Biological Physics · Physics 2024-12-17 Jie Su , Wei Wu , Denis Patterson , Simon Asher Levin , Jin Wang

We present a modified water-vegetation model to investigate the mechanistic relationship between infiltration-soil moisture feedback and vegetation pattern in arid/semi-arid ecosystems. Employing Turing pattern formation theory, we drive…

Dynamical Systems · Mathematics 2025-08-05 Juan Yan , Xiaoli Wang , Guohong Zhang , Yuan Yuan

Spatial self-organization emerges in distributed systems exhibiting local interactions when nonlinearities and the appropriate propagation of signals are at work. These kinds of phenomena can be modeled with different frameworks, typically…

Cell Behavior · Quantitative Biology 2016-11-23 Adriano Bonforti , Salva Duran-Nebreda , Raul Montañez , Ricard Solé

Water availability is a major environmental driver affecting riparian and wetland vegetation. The interaction between water table fluctuations and vegetation in a stochastic environment contributes to the complexity of the dynamics of these…

Populations and Evolution · Quantitative Biology 2012-05-14 Stefania Scarsoglio , Paolo D'Odorico , Francesco Laio , Luca Ridolfi

Self-organized pattern formation is vital for many biological processes. Reaction-diffusion models have advanced our understanding of how biological systems develop spatial structures, starting from homogeneity. However, biological…

This paper presents a modeling framework---mathematical model and computational framework---to study the response of a plastic material due to the presence and transport of a chemical species in the host material. Such a modeling framework…

Numerical Analysis · Mathematics 2020-11-16 M. S. Joshaghani , K. B. Nakshatrala

Patterned vegetation is a characteristic feature of many dryland ecosystems. While plant densities on the ecosystem-wide scale are typically low, a spatial self-organisation principle leads to the occurrence of alternating patches of high…

Populations and Evolution · Quantitative Biology 2020-05-05 Lukas Eigentler

We develop and analyze a spatial temporal model of light driven ecotoxicological processes, motivated by an aquatic predator-prey system of algae and \textsl{Daphnia} subject to a contaminant. Population dynamics are driven by light, which…

Populations and Evolution · Quantitative Biology 2021-01-01 A. Ibragimov , A. Peace

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions…

Populations and Evolution · Quantitative Biology 2017-12-13 Simone Pigolotti , Massimo Cencini , Daniel Molina , Miguel A. Muñoz

We investigate a recently proposed cross-diffusion system modelling the growth of gliobastoma taking into account size exclusion both in the migration and proliferation process. In addition to degenerate nonlinear cross-diffusion the model…

Analysis of PDEs · Mathematics 2017-10-12 Martin Burger , Patricia Friele , Jan-Frederik Pietschmann

How do interactions between species influence their spatial distribution in an ecosystem? To answer this question, we introduce a spatially-extended ecosystem of Generalized Lotka-Volterra type, where species can diffuse and interactions…

Statistical Mechanics · Physics 2025-01-08 Alessandro Salvatore , Fabián Aguirre-López , Ruben Zakine

Population cross-diffusion systems of Shigesada-Kawasaki-Teramoto type are derived in a mean-field-type limit from stochastic, moderately interacting many-particle systems for multiple population species in the whole space. The diffusion…

Analysis of PDEs · Mathematics 2021-10-13 Li Chen , Esther S. Daus , Alexandra Holzinger , Ansgar Jüngel
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