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Large language models (LLMs) have demonstrated remarkable advancements, primarily due to their capabilities in modeling the hidden relationships within text sequences. This innovation presents a unique opportunity in the field of life…

Genomics · Quantitative Biology 2024-12-25 Cong Li , Qingqing Long , Yuanchun Zhou , Meng Xiao

Large Language Models (LLMs) have exhibited impressive generation capabilities, but they suffer from hallucinations when solely relying on their internal knowledge, especially when answering questions that require less commonly known…

Computation and Language · Computer Science 2023-11-01 Wenting Zhao , Ye Liu , Tong Niu , Yao Wan , Philip S. Yu , Shafiq Joty , Yingbo Zhou , Semih Yavuz

Recent advancements in large language models (LLMs), such as DeepSeek-R1 and OpenAI-o1, have demonstrated the significant effectiveness of test-time scaling, achieving substantial performance gains across various benchmarks. These advanced…

Computation and Language · Computer Science 2025-04-15 Haotian Wang , Han Zhao , Shuaiting Chen , Xiaoyu Tian , Sitong Zhao , Yunjie Ji , Yiping Peng , Xiangang Li

Large Language Models (LLMs), despite their remarkable capabilities, are prone to generating hallucinated or outdated content due to their static internal knowledge. While Retrieval-Augmented Generation (RAG) integrated with Reinforcement…

Computation and Language · Computer Science 2026-01-14 Zhiwen Tan , Jiaming Huang , Qintong Wu , Hongxuan Zhang , Chenyi Zhuang , Jinjie Gu

Generative large language models (LLMs) can be a powerful tool for augmenting text annotation procedures, but their performance varies across annotation tasks due to prompt quality, text data idiosyncrasies, and conceptual difficulty.…

Computation and Language · Computer Science 2023-06-02 Nicholas Pangakis , Samuel Wolken , Neil Fasching

Large Reasoning Models(LRMs) such as OpenAI o1 and DeepSeek-R1 have shown remarkable reasoning capabilities by scaling test-time compute and generating long Chain-of-Thought(CoT). Distillation--post-training on LRMs-generated data--is a…

Machine Learning · Computer Science 2025-06-03 Huifeng Yin , Yu Zhao , Minghao Wu , Xuanfan Ni , Bo Zeng , Hao Wang , Tianqi Shi , Liangying Shao , Chenyang Lyu , Longyue Wang , Weihua Luo , Kaifu Zhang

Training reasoning language models (LMs) with reinforcement learning (RL) for one-hot correctness inherently relies on the LM being able to explore and solve its task with some chance at initialization. Furthermore, a key use case of…

Machine Learning · Computer Science 2025-10-30 Edoardo Cetin , Tianyu Zhao , Yujin Tang

Large Language Models (LLMs) have demonstrated remarkable capabilities in complex tasks. Recent advancements in Large Reasoning Models (LRMs), such as OpenAI o1 and DeepSeek-R1, have further improved performance in System-2 reasoning…

Computation and Language · Computer Science 2025-08-25 Yang Sui , Yu-Neng Chuang , Guanchu Wang , Jiamu Zhang , Tianyi Zhang , Jiayi Yuan , Hongyi Liu , Andrew Wen , Shaochen Zhong , Na Zou , Hanjie Chen , Xia Hu

Previous work has demonstrated that AI methods for analysing scientific literature benefit significantly from annotating sentences in papers according to their rhetorical roles, such as research gaps, results, limitations, extensions of…

Computation and Language · Computer Science 2026-02-11 Francisco Bolaños , Angelo Salatino , Francesco Osborne , Enrico Motta

The paradigm shift in large language models (LLMs) from instinctive responses to chain-of-thought (CoT) reasoning has fueled two prevailing assumptions: (1) reasoning capabilities only emerge in sufficiently large models, and (2) such…

Contemporary progress in large language models (LLMs) has revealed notable inferential capacities via reinforcement learning (RL) employing verifiable reward, facilitating the development of O1 and R1-like reasoning models. Directly…

Machine Learning · Computer Science 2025-10-21 Zexu Sun , Yongcheng Zeng , Erxue Min , Heyang Gao , Bokai Ji , Xu Chen

Recent advancements in Large Reasoning Models (LRMs), such as OpenAI's o1/o3 and DeepSeek-R1, have demonstrated remarkable performance in specialized reasoning tasks through human-like deliberative thinking and long chain-of-thought…

Artificial Intelligence · Computer Science 2025-11-20 Weixiang Zhao , Xingyu Sui , Jiahe Guo , Yulin Hu , Yang Deng , Yanyan Zhao , Xuda Zhi , Yongbo Huang , Hao He , Wanxiang Che , Ting Liu , Bing Qin

General-purpose embedding models excel at recognizing semantic similarities but fail to capture the characteristics of texts specified by user instructions. In contrast, instruction-tuned embedders can align embeddings with textual…

Computation and Language · Computer Science 2026-03-26 Peijun Qing , Puneet Mathur , Nedim Lipka , Varun Manjunatha , Ryan Rossi , Franck Dernoncourt , Saeed Hassanpour , Soroush Vosoughi

Large language models (LLMs)-empowered web agents enables automating complex, real-time web navigation tasks in enterprise environments. However, existing web agents relying on supervised fine-tuning (SFT) often struggle with generalization…

Computation and Language · Computer Science 2025-06-10 Yuchen Zhuang , Di Jin , Jiaao Chen , Wenqi Shi , Hanrui Wang , Chao Zhang

The technical report introduces O1-CODER, an attempt to replicate OpenAI's o1 model with a focus on coding tasks. It integrates reinforcement learning (RL) and Monte Carlo Tree Search (MCTS) to enhance the model's System-2 thinking…

Software Engineering · Computer Science 2024-12-11 Yuxiang Zhang , Shangxi Wu , Yuqi Yang , Jiangming Shu , Jinlin Xiao , Chao Kong , Jitao Sang

Large reasoning models (LRMs) like OpenAI o1 and DeepSeek R1 have demonstrated impressive performance on complex reasoning tasks like mathematics and programming with long Chain-of-Thought (CoT) reasoning sequences (slow-thinking), compared…

Artificial Intelligence · Computer Science 2025-07-15 Jason Zhu , Hongyu Li

In NLP, fine-tuning LLMs is effective for various applications but requires high-quality annotated data. However, manual annotation of data is labor-intensive, time-consuming, and costly. Therefore, LLMs are increasingly used to automate…

Computation and Language · Computer Science 2025-04-22 Muhammad Uzair Ul Haq , Davide Rigoni , Alessandro Sperduti

Large Language Models (LLMs) have shown remarkable capabilities in reasoning, exemplified by the success of OpenAI-o1 and DeepSeek-R1. However, integrating reasoning with external search processes remains challenging, especially for complex…

Large Language Models (LLMs) excel in complex reasoning tasks but struggle with consistent rule application, exception handling, and explainability, particularly in domains like legal analysis that require both natural language…

Artificial Intelligence · Computer Science 2025-11-11 Albert Sadowski , Jarosław A. Chudziak

Despite the inherent limitations of existing Large Language Models in directly reading and interpreting single-cell omics data, they demonstrate significant potential and flexibility as the Foundation Model. This research focuses on how to…

Genomics · Quantitative Biology 2024-02-21 Cong Li , Meng Xiao , Pengfei Wang , Guihai Feng , Xin Li , Yuanchun Zhou
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