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Predicting cellular responses to genetic perturbations represents a fundamental challenge in systems biology, critical for advancing therapeutic discovery and virtual cell modeling. While large language models (LLMs) show promise for…

While Large Language Models (LLMs) demonstrate exceptional performance in a multitude of Natural Language Processing (NLP) tasks, they encounter challenges in practical applications, including issues with hallucinations, inadequate…

Computation and Language · Computer Science 2024-06-13 Yihao Li , Ru Zhang , Jianyi Liu

Answering complex queries over incomplete knowledge graphs (KGs) is a challenging job. Most previous works have focused on learning entity/relation embeddings and simulating first-order logic operators with various neural networks. However,…

Computation and Language · Computer Science 2025-03-04 Tianle Xia , Liang Ding , Guojia Wan , Yibing Zhan , Bo Du , Dacheng Tao

Large Language Models (LLMs) have demonstrated significant potential in medical Question Answering (QA), yet they remain prone to hallucinations and ungrounded reasoning, limiting their reliability in high-stakes clinical scenarios. While…

Information Retrieval · Computer Science 2026-01-09 Jessica Ryan , Alexander I. Gumilang , Robert Wiliam , Derwin Suhartono

Retrieval-Augmented Generation (RAG) is a promising approach to mitigate hallucinations in Large Language Models (LLMs) for legal applications, but its reliability is critically dependent on the accuracy of the retrieval step. This is…

Computation and Language · Computer Science 2025-10-09 Markus Reuter , Tobias Lingenberg , Rūta Liepiņa , Francesca Lagioia , Marco Lippi , Giovanni Sartor , Andrea Passerini , Burcu Sayin

Cloud-native microservices enable rapid iteration and scalable deployment but also create complex, fast-evolving dependencies that challenge reliable diagnosis. Existing root cause analysis (RCA) approaches, even with multi-modal fusion of…

Software Engineering · Computer Science 2025-10-28 Songhan Zhang , Aoyang Fang , Yifan Yang , Ruiyi Cheng , Xiaoying Tang , Pinjia He

Large language models (LLMs) have revolutionized natural language processing (NLP), particularly through Retrieval-Augmented Generation (RAG), which enhances LLM capabilities by integrating external knowledge. However, traditional RAG…

Computation and Language · Computer Science 2025-10-23 Nengbo Wang , Xiaotian Han , Jagdip Singh , Jing Ma , Vipin Chaudhary

Memory systems often organize user-agent interactions as retrievable external memory and are crucial for long-running agents by overcoming the limited context windows of LLMs. However, existing memory systems invoke LLMs to process every…

Computation and Language · Computer Science 2026-05-18 Zijie Dai , Shiyuan Deng , Sheng Guan , Yizhou Tian , Xin Yao , Xiao Yan , James Cheng

Despite the remarkable progress of Large Language Models (LLMs), their performance in question answering (QA) remains limited by the lack of domain-specific and up-to-date knowledge. Retrieval-Augmented Generation (RAG) addresses this…

Information Retrieval · Computer Science 2025-09-17 Yaodong Su , Yixiang Fang , Yingli Zhou , Quanqing Xu , Chuanhui Yang

Recently, large language models (LLMs) have shown strong potential in facilitating human-robotic interaction and collaboration. However, existing LLM-based systems often overlook the misalignment between human and robot perceptions, which…

Robotics · Computer Science 2024-09-25 Yixin Chen , Guoxi Zhang , Yaowei Zhang , Hongming Xu , Peiyuan Zhi , Qing Li , Siyuan Huang

We introduce Context Kubernetes, an architecture for orchestrating enterprise knowledge in agentic AI systems, with a prototype implementation and eight experiments. The core observation is that delivering the right knowledge, to the right…

Artificial Intelligence · Computer Science 2026-04-17 Charafeddine Mouzouni

Recent advancements in large language models (LLMs) have shown impressive versatility across various tasks. To eliminate their hallucinations, retrieval-augmented generation (RAG) has emerged as a powerful approach, leveraging external…

Computation and Language · Computer Science 2025-05-30 Yuzheng Cai , Zhenyue Guo , Yiwen Pei , Wanrui Bian , Weiguo Zheng

Large language models (LLMs) frequently generate confident yet factually incorrect content when used for language generation (a phenomenon often known as hallucination). Retrieval augmented generation (RAG) tries to reduce factual errors by…

Information Retrieval · Computer Science 2026-04-01 Dobrik Georgiev , Kheeran Naidu , Alberto Cattaneo , Federico Monti , Carlo Luschi , Daniel Justus

Event detection and text reasoning have become critical applications across various domains. While LLMs have recently demonstrated impressive progress in reasoning abilities, they often struggle with event detection, particularly due to the…

Computation and Language · Computer Science 2024-09-04 Mazal Bethany , Emet Bethany , Brandon Wherry , Cho-Yu Chiang , Nishant Vishwamitra , Anthony Rios , Peyman Najafirad

For large-scale simulation codes with huge and complex code bases, where bit-for-bit comparisons are too restrictive, finding the source of statistically significant discrepancies (e.g., from a previous version, alternative hardware or…

Distributed, Parallel, and Cluster Computing · Computer Science 2019-02-12 Daniel J. Milroy , Allison H. Baker , Dorit M. Hammerling , Youngsung Kim , Elizabeth R. Jessup , Thomas Hauser

With the increasing popularity of large language models (LLMs), reasoning on basic graph algorithm problems is an essential intermediate step in assessing their abilities to process and infer complex graph reasoning tasks. Existing methods…

Computation and Language · Computer Science 2024-08-27 Qiaolong Cai , Zhaowei Wang , Shizhe Diao , James Kwok , Yangqiu Song

Root cause localization in cloud native microservice systems requires modeling complex service dependencies, irregular temporal dynamics, and heterogeneous observability data. We present HyperODE RCA, a unified framework that combines…

Machine Learning · Computer Science 2026-05-04 Xin Liu , Yuhang He , Sichen Zhao , Kejian Tong , Xingyu Zhang

Recent multimodal large language models (MLLMs) still struggle with long document understanding due to two fundamental challenges: information interference from abundant irrelevant content, and the quadratic computational cost of…

Computation and Language · Computer Science 2025-11-14 Yongxin Shi , Jiapeng Wang , Zeyu Shan , Dezhi Peng , Zening Lin , Lianwen Jin

Efficiently processing and interpreting network data is critical for the operation of increasingly complex networks. Recent advances in Large Language Models (LLM) and Retrieval-Augmented Generation (RAG) techniques have improved data…

Networking and Internet Architecture · Computer Science 2025-06-17 Amar Abane , Anis Bekri , Abdella Battou , Saddek Bensalem

Long-context inference in LLMs faces the dual challenges of quadratic attention complexity and prohibitive KV cache memory. While token-level sparse attention offers superior accuracy, its indexing overhead is costly; block-level methods…

Computation and Language · Computer Science 2026-04-10 Yuxuan Hu , Jianchao Tan , Jiaqi Zhang , Wen Zan , Pingwei Sun , Yifan Lu , Yerui Sun , Yuchen Xie , Xunliang Cai , Jing Zhang