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The integration of large language models (LLMs) into scientific research is accelerating the realization of autonomous ``AI Scientists.'' While recent advancements have empowered AI to formulate hypotheses and design experiments, a critical…

Quantum Physics · Physics 2026-05-27 Masaki Shiraishi , Ikko Hamamura , Tatsuya Ishigaki , Tadashi Kadowaki

Autonomous AI agents powered by large language models (LLMs) with structured function-calling interfaces enable real-time data retrieval, computation, and multi-step orchestration. However, the rapid growth of plugins, connectors, and…

Cryptography and Security · Computer Science 2025-12-16 Mohamed Amine Ferrag , Norbert Tihanyi , Djallel Hamouda , Leandros Maglaras , Abderrahmane Lakas , Merouane Debbah

Prompt injection is listed as the number-one vulnerability class in the OWASP Top 10 for LLM Applications that can subvert LLM guardrails, disclose sensitive data, and trigger unauthorized tool use. Developers are rapidly adopting…

Cryptography and Security · Computer Science 2026-03-24 Charoes Huang , Xin Huang , Amin Milani Fard

The Model Context Protocol (MCP) introduces a standard specification that defines how Foundation Model (FM)-based agents should interact with external systems by invoking tools. However, to understand a tool's purpose and features, FMs rely…

Software Engineering · Computer Science 2026-02-24 Mohammed Mehedi Hasan , Hao Li , Gopi Krishnan Rajbahadur , Bram Adams , Ahmed E. Hassan

The evolution of Large Language Models (LLMs) into Agentic AI has established the Model Context Protocol (MCP) as the standard for connecting reasoning engines with external tools. Although this decoupled architecture fosters modularity, it…

Cryptography and Security · Computer Science 2026-02-17 Yunhao Yao , Zhiqiang Wang , Haoran Cheng , Yihang Cheng , Haohua Du , Xiang-Yang Li

Model Context Protocol (MCP) is a rapidly adopted standard for defining and invoking external tools in LLM applications. The multi-layered architecture of MCP introduces new attack surfaces such as tool poisoning, in addition to traditional…

Cryptography and Security · Computer Science 2026-04-21 İpek Abasıkeleş Turgut , Edip Gümüş

Bioinformatics web servers are critical resources in modern biomedical research, facilitating interactive exploration of datasets through custom-built interfaces with rich visualization capabilities. However, this human-centric design…

Other Quantitative Biology · Quantitative Biology 2026-02-25 Matthias Flotho , Ian Ferenc Diks , Philipp Flotho , Leidy-Alejandra G. Molano , Pascal Hirsch , Andreas Keller

The rise of tool-using Large Language Model (LLM) agents, standardized by protocols like the Model Context Protocol (MCP), has unlocked unprecedented autonomous execution capabilities for LLM Agents by integrating external open-domain…

Cryptography and Security · Computer Science 2026-05-26 Shi Liu , Xuehai Tang , Xikang Yang , Liang Lin , Biyu Zhou , Wenjie Xiao , Wantao Liu

As Large Language Models (LLMs) evolve from passive text generators to active reasoning agents capable of interacting with external tools, the Model Context Protocol (MCP) has emerged as a key standardized framework for dynamic tool…

Artificial Intelligence · Computer Science 2025-10-14 Xuanqi Gao , Siyi Xie , Juan Zhai , Shiqing Ma , Chao Shen

Large Language Models (LLMs) are increasingly serving as autonomous agents, and their utilization of external tools via the Model Context Protocol (MCP) is considered a future trend. Current MCP evaluation sets suffer from issues such as…

Artificial Intelligence · Computer Science 2026-01-22 Wenrui Liu , Zixiang Liu , Elsie Dai , Wenhan Yu , Lei Yu , Tong Yang , Jinjun Han , Hong Gao

The rapid expansion of the model context protocol (MCP) ecosystem enables large language model (LLM)-based agents to access a wide range of external tools via a standardized interface. However, identifying appropriate MCP servers for a…

Software Engineering · Computer Science 2026-04-21 Shiyu He , Zhiman Chen , Yuqi Zhao , Neng Zhang , Ran Mo , Yutao Ma

This paper reports on the implementation and evaluation of a Model Context Protocol (MCP) server for DraCor, enabling Large Language Models (LLM) to autonomously interact with the DraCor API. We conducted experiments focusing on tool…

Software Engineering · Computer Science 2025-08-20 Peer Trilcke , Ingo Börner , Henny Sluyter-Gäthje , Daniil Skorinkin , Frank Fischer , Carsten Milling

Mobile collaborative learning (MCL) is highly acknowledged and focusing paradigm in eductional institutions and several organizations across the world. It exhibits intellectual synergy of various combined minds to handle the problem and…

Networking and Internet Architecture · Computer Science 2012-08-13 Abdul Razaque , Khaled Elleithy

Tool-augmented LLM agents raise new security risks: tool executions can introduce runtime-only behaviors, including prompt injection and unintended exposure of external inputs (e.g., environment secrets or local files). While existing…

Cryptography and Security · Computer Science 2026-01-06 Zhuoran Tan , Run Hao , Jeremy Singer , Yutian Tang , Christos Anagnostopoulos

AI assistants can decompose multi-step workflows, but they do not natively speak industrial protocols such as Modbus, MQTT/Sparkplug B, or OPC UA, so this paper presents INDUSTRICONNECT, a prototype suite of Model Context Protocol (MCP)…

Software Engineering · Computer Science 2026-03-27 Melwin Xavier , Melveena Jolly , Vaisakh M A , Midhun Xavier

The model context protocol (MCP) has been widely adapted as an open standard enabling the seamless integration of generative AI agents. However, recent work has shown the MCP is susceptible to retrieval-based "falsely benign" attacks…

Machine Learning · Computer Science 2025-05-30 John Halloran

Large Language Models (LLMs) exhibit strong general-purpose reasoning abilities but lack access to wireless environment information due to the absence of native sensory input and domain-specific priors. Previous attempts to apply LLMs in…

Networking and Internet Architecture · Computer Science 2025-05-06 Zongxi Liu , Hongyang Du

The remarkable capability of large language models (LLMs) has led to the wide application of LLM-based agents in various domains. To standardize interactions between LLM-based agents and their environments, model context protocol (MCP)…

Cryptography and Security · Computer Science 2025-09-26 Ping He , Changjiang Li , Binbin Zhao , Tianyu Du , Shouling Ji

The rapid development of the AI agent communication protocols, including the Model Context Protocol (MCP), Agent2Agent (A2A), Agora, and Agent Network Protocol (ANP), is reshaping how AI agents communicate with tools, services, and each…

Cryptography and Security · Computer Science 2026-04-20 Zeynab Anbiaee , Mahdi Rabbani , Mansur Mirani , Gunjan Piya , Igor Opushnyev , Ali Ghorbani , Sajjad Dadkhah

Large language models translate natural language into database queries, yet context window limitations prevent direct deployment in reporting systems where complete datasets exhaust available tokens. The Model Context Protocol specification…

Software Engineering · Computer Science 2025-10-08 Scott Frees
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