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Recent developments in specialized computer hardware have greatly accelerated atomic level Molecular Dynamics (MD) simulations. A single GPU-attached cluster is capable of producing microsecond-length trajectories in reasonable amounts of…

Quantitative Methods · Quantitative Biology 2018-06-01 Yunlong Liu , L. Mario Amzel

One's present repertoire of antibodies encodes the history of one's past immunological experience. Can the present autoantibody repertoire be consulted to predict resistance or susceptibility to the future development of an autoimmune…

Tissues and Organs · Quantitative Biology 2009-11-10 Francisco J. Quintana , Peter H. Hagedorn , Gad Elizur , Yifat Marbel , Eytan Domany , Irun R. Cohen

The canine lymphoma blood test detects the levels of two biomarkers, the acute phase proteins (C-Reactive Protein and Haptoglobin). This test can be used for diagnostics, for screening, and for remission monitoring as well. We analyze…

Quantitative Methods · Quantitative Biology 2014-10-13 E. M. Mirkes , I. Alexandrakis , K. Slater , R. Tuli , A. N. Gorban

In 2018, the STAR collaboration collected data from $_{44}^{96}Ru+_{44}^{96}Ru$ and $_{40}^{96}Zr+_{40}^{96}Zr$ at $\sqrt{s_{NN}}=200$ GeV to search for the presence of the chiral magnetic effect in collisions of nuclei. The isobar…

Nuclear Experiment · Physics 2019-11-05 STAR Collaboration , J. Adam , L. Adamczyk , J. R. Adams , J. K. Adkins , G. Agakishiev , M. M. Aggarwal , Z. Ahammed , I. Alekseev , D. M. Anderson , A. Aparin , E. C. Aschenauer , M. U. Ashraf , F. G. Atetalla , A. Attri , G. S. Averichev , V. Bairathi , K. Barish , A. Behera , R. Bellwied , A. Bhasin , J. Bielcik , J. Bielcikova , L. C. Bland , I. G. Bordyuzhin , J. D. Brandenburg , A. V. Brandin , J. Butterworth , H. Caines , M. Calderón de la Barca Sánchez , D. Cebra , I. Chakaberia , P. Chaloupka , B. K. Chan , F-H. Chang , Z. Chang , N. Chankova-Bunzarova , A. Chatterjee , D. Chen , J. H. Chen , X. Chen , Z. Chen , J. Cheng , M. Cherney , M. Chevalier , S. Choudhury , W. Christie , H. J. Crawford , M. Csanád , M. Daugherity , T. G. Dedovich , I. M. Deppner , A. A. Derevschikov , L. Didenko , X. Dong , J. L. Drachenberg , J. C. Dunlop , T. Edmonds , N. Elsey , J. Engelage , G. Eppley , R. Esha , S. Esumi , O. Evdokimov , J. Ewigleben , O. Eyser , R. Fatemi , S. Fazio , P. Federic , J. Fedorisin , C. J. Feng , Y. Feng , P. Filip , E. Finch , Y. Fisyak , A. Francisco , L. Fulek , C. A. Gagliardi , T. Galatyuk , F. Geurts , A. Gibson , K. Gopal , D. Grosnick , W. Guryn , A. I. Hamad , A. Hamed , J. W. Harris , W. He , X. He , S. Heppelmann , S. Heppelmann , N. Herrmann , E. Hoffman , L. Holub , Y. Hong , S. Horvat , Y. Hu , H. Z. Huang , S. L. Huang , T. Huang , X. Huang , T. J. Humanic , P. Huo , G. Igo , D. Isenhower , W. W. Jacobs , C. Jena , A. Jentsch , Y. JI , J. Jia , K. Jiang , S. Jowzaee , X. Ju , E. G. Judd , S. Kabana , M. L. Kabir , S. Kagamaster , D. Kalinkin , K. Kang , D. Kapukchyan , K. Kauder , H. W. Ke , D. Keane , A. Kechechyan , M. Kelsey , Y. V. Khyzhniak , D. P. Kikoła , C. Kim , B. Kimelman , D. Kincses , T. A. Kinghorn , I. Kisel , A. Kiselev , A. Kisiel , M. Kocan , L. Kochenda , L. K. Kosarzewski , L. Kramarik , P. Kravtsov , K. Krueger , N. Kulathunga Mudiyanselage , L. Kumar , R. Kunnawalkam Elayavalli , J. H. Kwasizur , R. Lacey , S. Lan , J. M. Landgraf , J. Lauret , A. Lebedev , R. Lednicky , J. H. Lee , Y. H. Leung , C. Li , W. Li , W. Li , X. Li , Y. Li , Y. Liang , R. Licenik , T. Lin , Y. Lin , M. A. Lisa , F. Liu , H. Liu , P. Liu , P. Liu , T. Liu , X. Liu , Y. Liu , Z. Liu , T. Ljubicic , W. J. Llope , R. S. Longacre , N. S. Lukow , S. Luo , X. Luo , G. L. Ma , L. Ma , R. Ma , Y. G. Ma , N. Magdy , R. Majka , D. Mallick , S. Margetis , C. Markert , H. S. Matis , J. A. Mazer , N. G. Minaev , S. Mioduszewski , B. Mohanty , I. Mooney , Z. Moravcova , D. A. Morozov , M. Nagy , J. D. Nam , Md. Nasim , K. Nayak , D. Neff , J. M. Nelson , D. B. Nemes , M. Nie , G. Nigmatkulov , T. Niida , L. V. Nogach , T. Nonaka , G. Odyniec , A. Ogawa , S. Oh , V. A. Okorokov , B. S. Page , R. Pak , A. Pandav , Y. Panebratsev , B. Pawlik , D. Pawlowska , H. Pei , C. Perkins , L. Pinsky , R. L. Pintér , J. Pluta , J. Porter , M. Posik , N. K. Pruthi , M. Przybycien , J. Putschke , H. Qiu , A. Quintero , S. K. Radhakrishnan , S. Ramachandran , R. L. Ray , R. Reed , H. G. Ritter , J. B. Roberts , O. V. Rogachevskiy , J. L. Romero , L. Ruan , J. Rusnak , N. R. Sahoo , H. Sako , S. Salur , J. Sandweiss , S. Sato , W. B. Schmidke , N. Schmitz , B. R. Schweid , F. Seck , J. Seger , M. Sergeeva , R. Seto , P. Seyboth , N. Shah , E. Shahaliev , P. V. Shanmuganathan , M. Shao , F. Shen , W. Q. Shen , S. S. Shi , Q. Y. Shou , E. P. Sichtermann , R. Sikora , M. Simko , J. Singh , S. Singha , N. Smirnov , W. Solyst , P. Sorensen , H. M. Spinka , B. Srivastava , T. D. S. Stanislaus , M. Stefaniak , D. J. Stewart , M. Strikhanov , B. Stringfellow , A. A. P. Suaide , M. Sumbera , B. Summa , X. M. Sun , Y. Sun , Y. Sun , B. Surrow , D. N. Svirida , P. Szymanski , A. H. Tang , Z. Tang , A. Taranenko , T. Tarnowsky , J. H. Thomas , A. R. Timmins , D. Tlusty , M. Tokarev , C. A. Tomkiel , S. Trentalange , R. E. Tribble , P. Tribedy , S. K. Tripathy , O. D. Tsai , Z. Tu , T. Ullrich , D. G. Underwood , I. Upsal , G. Van Buren , J. Vanek , A. N. Vasiliev , I. Vassiliev , F. Videbæk , S. Vokal , S. A. Voloshin , F. Wang , G. Wang , J. S. Wang , P. Wang , Y. Wang , Y. Wang , Z. Wang , J. C. Webb , P. C. Weidenkaff , L. Wen , G. D. Westfall , H. Wieman , S. W. Wissink , R. Witt , Y. Wu , Z. G. Xiao , G. Xie , W. Xie , H. Xu , N. Xu , Q. H. Xu , Y. F. Xu , Y. Xu , Z. Xu , Z. Xu , C. Yang , Q. Yang , S. Yang , Y. Yang , Z. Yang , Z. Ye , Z. Ye , L. Yi , K. Yip , H. Zbroszczyk , W. Zha , D. Zhang , S. Zhang , S. Zhang , X. P. Zhang , Y. Zhang , Z. J. Zhang , Z. Zhang , J. Zhao , C. Zhong , C. Zhou , X. Zhu , Z. Zhu , M. Zurek , M. Zyzak

Adversarial sample attacks perturb benign inputs to induce DNN misbehaviors. Recent research has demonstrated the widespread presence and the devastating consequences of such attacks. Existing defense techniques either assume prior…

Machine Learning · Computer Science 2018-10-30 Guanhong Tao , Shiqing Ma , Yingqi Liu , Xiangyu Zhang

BACKGROUND AND OBJECTIVES: The multiple chest x-ray datasets released in the last years have ground-truth labels intended for different computer vision tasks, suggesting that performance in automated chest-xray interpretation might improve…

Microarray data analysis is one of the major area of research in the field computational biology. Numerous techniques like clustering, biclustering are often applied to microarray data to extract meaningful outcomes which play key roles in…

Neural and Evolutionary Computing · Computer Science 2019-09-04 Shubhankar Mohapatra , Moumita Sarkar , Anjali Mohapatra , Bhawani Sankar Biswal

Recent advances in cancer research largely rely on new developments in microscopic or molecular profiling techniques offering high level of detail with respect to either spatial or molecular features, but usually not both. Here, we present…

This study proposes a method for radar-based identification of individuals using a combination of their respiratory and heartbeat features. In the proposed method, the target individual's respiratory features are extracted using the…

Signal Processing · Electrical Eng. & Systems 2024-12-18 Haruto Kobayashi , Yuji Tanaka , Takuya Sakamoto

Melanoma detection is vital for early diagnosis and effective treatment. While deep learning models on dermoscopic images have shown promise, they require specialized equipment, limiting their use in broader clinical settings. This study…

Computer Vision and Pattern Recognition · Computer Science 2026-05-20 Volodymyr Sydorskyi , Igor Krashenyi , Oleksii Yakubenko

Genome-Scale Metabolic Models (GEMs) describe the interactions between genes, proteins, and the biochemical reactions that underpin an organism's metabolism aiming to computationally simulate functions at the cellular level. While many…

In this study, we investigate what a practically useful approach is in order to achieve robust skin disease diagnosis. A direct approach is to target the ground truth diagnosis labels, while an alternative approach instead focuses on…

Computer Vision and Pattern Recognition · Computer Science 2022-03-24 Haofu Liao , Yuncheng Li , Jiebo Luo

We applied machine learning to the unmet medical need of rapid and accurate diagnosis and prognosis of acute infections and sepsis in emergency departments. Our solution consists of a Myrna (TM) Instrument and embedded TriVerity (TM)…

Multimodal data analysis can lead to more accurate diagnoses of brain disorders due to the complementary information that each modality adds. However, a major challenge of using multimodal datasets in the neuroimaging field is incomplete…

Image and Video Processing · Electrical Eng. & Systems 2025-08-14 Reihaneh Hassanzadeh , Anees Abrol , Hamid Reza Hassanzadeh , Vince D. Calhoun

The world has witnessed unprecedented human and economic loss from the COVID-19 disease, caused by the novel coronavirus SARS-CoV-2. Extensive research is being conducted across the globe to identify therapeutic agents against the…

Biomolecules · Quantitative Biology 2020-04-09 Rohit Batra , Henry Chan , Ganesh Kamath , Rampi Ramprasad , Mathew J. Cherukara , Subramanian Sankaranarayanan

The conventional solutions for fault-detection, identification, and reconstruction (FDIR) require centralized decision-making mechanisms which are typically combinatorial in their nature, necessitating the design of an efficient distributed…

Systems and Control · Electrical Eng. & Systems 2025-05-20 Shiraz Khan , Inseok Hwang

Malaria remains one of the most pressing public health concerns globally, causing significant morbidity and mortality, especially in sub-Saharan Africa. Rapid and accurate diagnosis is crucial for effective treatment and disease management.…

Image and Video Processing · Electrical Eng. & Systems 2024-07-01 Saurabh Sawant , Anurag Singh

The paper proposes a modular-based approach to constraint handling in process optimization and control. This is partly motivated by the recent interest in learning-based methods, e.g., within bioproduction, for which constraint handling…

Systems and Control · Electrical Eng. & Systems 2026-01-21 Yu Wang , Xiao Chen , Hubert Schwarz , Véronique Chotteau , Elling W. Jacobsen

Immunotherapy is an effective precision medicine treatment for several cancers. Imaging signatures of the underlying genome (radiogenomics) in glioblastoma patients may serve as preoperative biomarkers of the tumor-host immune apparatus.…

Tissues and Organs · Quantitative Biology 2024-05-14 Prajwal Ghimire , Ben Kinnersley , Golestan Karami , Prabhu Arumugam , Richard Houlston , Keyoumars Ashkan , Marc Modat , Thomas C Booth

Acquiring properly annotated data is expensive in the medical field as it requires experts, time-consuming protocols, and rigorous validation. Active learning attempts to minimize the need for large annotated samples by actively sampling…

Image and Video Processing · Electrical Eng. & Systems 2023-06-22 Bidur Khanal , Binod Bhattarai , Bishesh Khanal , Danail Stoyanov , Cristian A. Linte
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