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A crucial step in the analysis of persistent homology is the transformation of data into an appropriate topological object (in our case, a simplicial complex). Modern packages for persistent homology often construct Vietoris--Rips or other…

Computational Geometry · Computer Science 2019-09-18 Michelle Feng , Mason A. Porter

Techniques from computational topology, in particular persistent homology, are becoming increasingly relevant for data analysis. Their stable metrics permit the use of many distance-based data analysis methods, such as multidimensional…

Algebraic Topology · Mathematics 2021-01-20 Bastian Rieck , Filip Sadlo , Heike Leitte

Spatial-temporal data modeling aims to mine the underlying spatial relationships and temporal dependencies of objects in a system. However, most existing methods focus on the modeling of spatial-temporal data in a single mode, lacking the…

Machine Learning · Computer Science 2023-08-23 Zihang Liu , Le Yu , Tongyu Zhu , Leiei Sun

Topological neural networks have emerged as powerful successors of graph neural networks. However, they typically involve higher-order message passing, which incurs significant computational expense. We circumvent this issue with a novel…

Machine Learning · Computer Science 2025-07-17 Maximilian Krahn , Vikas Garg

Given the large volume of side information from different modalities, multimodal recommender systems have become increasingly vital, as they exploit richer semantic information beyond user-item interactions. Recent works highlight that…

Information Retrieval · Computer Science 2024-12-17 Junjie Huang , Jiarui Qin , Yong Yu , Weinan Zhang

Learning the latent network structure from large scale multivariate point process data is an important task in a wide range of scientific and business applications. For instance, we might wish to estimate the neuronal functional…

Methodology · Statistics 2021-01-21 Biao Cai , Jingfei Zhang , Yongtao Guan

A multilayer perceptron (MLP) is typically made of multiple fully connected layers with nonlinear activation functions. There have been several approaches to make them better (e.g. faster convergence, better convergence limit, etc.). But…

Machine Learning · Computer Science 2021-08-24 Taewoon Kim

Learning time-evolving objects such as multivariate time series and dynamic networks requires the development of novel knowledge representation mechanisms and neural network architectures, which allow for capturing implicit time-dependent…

Machine Learning · Computer Science 2024-01-25 Baris Coskunuzer , Ignacio Segovia-Dominguez , Yuzhou Chen , Yulia R. Gel

Recent empirical evidence has demonstrated that the training dynamics of large-scale deep neural networks occur within low-dimensional subspaces. While this has inspired new research into low-rank training, compression, and adaptation,…

Machine Learning · Computer Science 2026-02-09 Alec S. Xu , Can Yaras , Matthew Asato , Qing Qu , Laura Balzano

Complex systems are characterized by many interacting units that give rise to emergent behavior. A particularly advantageous way to study these systems is through the analysis of the networks that encode the interactions among the system's…

Physics and Society · Physics 2019-03-21 Alberto Aleta , Yamir Moreno

Neural networks encode inputs as high-dimensional vectors, known as representations, that capture how models process data by encoding task-relevant structure and semantics. Representation alignment refers to the degree to which different…

Computational Geometry · Computer Science 2026-05-26 Xinyuan Yan , Rita Sevastjanova , Mennatallah El-Assady , Bei Wang

Topological data analysis is an emerging mathematical concept for characterizing shapes in multi-scale data. In this field, persistence diagrams are widely used as a descriptor of the input data, and can distinguish robust and noisy…

Machine Learning · Statistics 2017-06-13 Genki Kusano , Kenji Fukumizu , Yasuaki Hiraoka

Interacting, self-propelled particles such as epithelial cells can dynamically self-organize into complex multicellular patterns, which are challenging to classify without a priori information. Classically, different phases and phase…

Quantitative Methods · Quantitative Biology 2021-01-19 Dhananjay Bhaskar , William Y. Zhang , Ian Y. Wong

Topological data analysis (TDA) is a rapidly developing collection of methods for studying the shape of point cloud and other data types. One popular approach, designed to be robust to noise and outliers, is to first use a smoothing…

Methodology · Statistics 2017-12-27 Chul Moon , Noah Giansiracusa , Nicole A. Lazar

Topological techniques have become a popular tool for studying information flows in neural networks. In particular, simplicial homology theory is used to analyze how cognitive representations of space emerge from large conglomerates of…

Neurons and Cognition · Quantitative Biology 2025-02-19 Andrey Babichev , Vladimir Vashin , Yuri Dabaghian

While topological data analysis has emerged as a powerful paradigm for structural inference, its foundational tools, notably persistent homology and the persistent Laplacian, are frequently insensitive to localized structural fluctuations…

Algebraic Topology · Mathematics 2026-03-10 Jian Liu , Hongsong Feng , Kefeng Liu

Multilayer networks represent systems in which there are several topological levels each one representing one kind of interaction or interdependency between the systems' elements. These networks have attracted a lot of attention recently…

Physics and Society · Physics 2015-04-22 Emanuele Cozzo , Guilherme Ferraz de Arruda , Francisco A. Rodrigues , Yamir Moreno

Previous work has demonstrated that MLPs within ReLU Transformers exhibit high levels of sparsity, with many of their activations equal to zero for any given token. We build on that work to more deeply explore how token-level sparsity…

Machine Learning · Computer Science 2024-07-11 Cody Wild , Jesper Anderson

In this paper, we explore the role of network topology on maintaining the extensive property of entropy. We study analytically and numerically how the topology contributes to maintaining extensivity of entropy in multiplex networks, i.e.…

Chaotic Dynamics · Physics 2017-04-17 Chris G. Antonopoulos , Murilo S. Baptista

Spatial awareness in mammals is based on an internalized representation of the environment, encoded by large networks of spiking neurons. While such representations can last for a long time, the underlying neuronal network is transient:…

Neurons and Cognition · Quantitative Biology 2016-02-03 Andrey Babichev , Yuri Dabaghian
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