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This study aims to optimize the existing retrieval-augmented generation model (RAG) by introducing a graph structure to improve the performance of the model in dealing with complex knowledge reasoning tasks. The traditional RAG model has…

Information Retrieval · Computer Science 2024-11-07 Yuxin Dong , Shuo Wang , Hongye Zheng , Jiajing Chen , Zhenhong Zhang , Chihang Wang

This work presents the use of graph learning for the prediction of multi-step experimental outcomes for applications across experimental research, including material science, chemistry, and biology. The viability of geometric learning for…

Machine Learning · Computer Science 2024-08-13 Amanda A. Volk , Robert W. Epps , Jeffrey G. Ethier , Luke A. Baldwin

Deep learning models on graphs have achieved remarkable performance in various graph analysis tasks, e.g., node classification, link prediction, and graph clustering. However, they expose uncertainty and unreliability against the…

Machine Learning · Computer Science 2022-04-06 Liang Chen , Jintang Li , Jiaying Peng , Tao Xie , Zengxu Cao , Kun Xu , Xiangnan He , Zibin Zheng , Bingzhe Wu

The recent ISO SQL:2023 standard adopts SQL/PGQ (Property Graph Queries), facilitating graph-like querying within relational databases. This advancement, however, underscores a significant gap in how to effectively optimize SQL/PGQ queries…

Databases · Computer Science 2024-12-10 Yunkai Lou , Longbin Lai , Bingqing Lyu , Yufan Yang , Xiaoli Zhou , Wenyuan Yu , Ying Zhang , Jingren Zhou

Many applications of machine learning require a model to make accurate pre-dictions on test examples that are distributionally different from training ones, while task-specific labels are scarce during training. An effective approach to…

Machine Learning · Computer Science 2020-02-20 Weihua Hu , Bowen Liu , Joseph Gomes , Marinka Zitnik , Percy Liang , Vijay Pande , Jure Leskovec

Knowledge Graph Embedding (KGE) has proven to be an effective approach to solving the Knowledge Graph Completion (KGC) task. Relational patterns which refer to relations with specific semantics exhibiting graph patterns are an important…

Artificial Intelligence · Computer Science 2023-08-16 Long Jin , Zhen Yao , Mingyang Chen , Huajun Chen , Wen Zhang

Graph Neural Networks (GNNs) have become the state-of-the-art method for many applications on graph structured data. GNNs are a model for graph representation learning, which aims at learning to generate low dimensional node embeddings that…

Machine Learning · Computer Science 2022-05-23 Davide Buffelli , Fabio Vandin

Graph embedding is a transformation of nodes of a graph into a set of vectors. A~good embedding should capture the graph topology, node-to-node relationship, and other relevant information about the graph, its subgraphs, and nodes. If these…

Social and Information Networks · Computer Science 2022-06-22 Arash Dehghan-Kooshkghazi , Bogumił Kamiński , Łukasz Kraiński , Paweł Prałat , François Théberge

Large-scale "pre-train and prompt learning" paradigms have demonstrated remarkable adaptability, enabling broad applications across diverse domains such as question answering, image recognition, and multimodal retrieval. This approach fully…

The need to analyze graphs is ubiquitous across various fields, from social networks to biological research and recommendation systems. Therefore, enabling the ability of large language models (LLMs) to process graphs is an important step…

Computation and Language · Computer Science 2025-11-04 Xin Li , Weize Chen , Qizhi Chu , Haopeng Li , Zhaojun Sun , Ran Li , Chen Qian , Yiwei Wei , Zhiyuan Liu , Chuan Shi , Maosong Sun , Cheng Yang

Deep graph neural networks (GNNs) have achieved excellent results on various tasks on increasingly large graph datasets with millions of nodes and edges. However, memory complexity has become a major obstacle when training deep GNNs for…

Machine Learning · Computer Science 2022-04-12 Guohao Li , Matthias Müller , Bernard Ghanem , Vladlen Koltun

Graph-structured data, prevalent in domains ranging from social networks to biochemical analysis, serve as the foundation for diverse real-world systems. While graph neural networks demonstrate proficiency in modeling this type of data,…

Machine Learning · Computer Science 2024-06-21 Wei Ju , Siyu Yi , Yifan Wang , Qingqing Long , Junyu Luo , Zhiping Xiao , Ming Zhang

The phenomenal growth of graph data from a wide variety of real-world applications has rendered graph querying to be a problem of paramount importance. Traditional techniques use structural as well as node similarities to find matches of a…

Databases · Computer Science 2021-05-14 Jithin Vachery , Akhil Arora , Sayan Ranu , Arnab Bhattacharya

We present a graph neural network model for solving graph-to-graph learning problems. Most deep learning on graphs considers ``simple'' problems such as graph classification or regressing real-valued graph properties. For such tasks, the…

Machine Learning · Computer Science 2021-06-08 Guan Wang , Francois Bernard Lauze , Aasa Feragen

Relational data stored in RDBMS is foundational to many real-world applications across domains such as e-commerce, finance, and sociality. While deep neural networks (DNNs) have achieved strong performance on tabular data with a single…

Databases · Computer Science 2026-05-15 Lingze Zeng , Shaofeng Cai , Changshuo Liu , Zhongle Xie , Yuncheng Wu , Beng Chin Ooi

Graphs are important data representations for describing objects and their relationships, which appear in a wide diversity of real-world scenarios. As one of a critical problem in this area, graph generation considers learning the…

Machine Learning · Computer Science 2022-10-06 Xiaojie Guo , Liang Zhao

Recently, Graph Neural Networks (GNNs) have gained popularity in a variety of real-world scenarios. Despite the great success, the architecture design of GNNs heavily relies on manual labor. Thus, automated graph neural network (AutoGNN)…

Machine Learning · Computer Science 2021-12-03 Zhili Wang , Shimin Di , Lei Chen

Graph clustering, which learns the node representations for effective cluster assignments, is a fundamental yet challenging task in data analysis and has received considerable attention accompanied by graph neural networks in recent years.…

Machine Learning · Computer Science 2023-09-12 Si-Yu Yi , Wei Ju , Yifang Qin , Xiao Luo , Luchen Liu , Yong-Dao Zhou , Ming Zhang

Unraveling the complexities of Gene Regulatory Networks (GRNs) is crucial for understanding cellular processes and disease mechanisms. Traditional computational methods often struggle with the dynamic nature of these networks. This study…

Machine Learning · Computer Science 2025-03-04 Hakan T. Otal , Abdulhamit Subasi , Furkan Kurt , M. Abdullah Canbaz , Yasin Uzun

Scene graph generation (SGG) is built on top of detected objects to predict object pairwise visual relations for describing the image content abstraction. Existing works have revealed that if the links between objects are given as prior…

Computer Vision and Pattern Recognition · Computer Science 2022-02-23 Yuyu Guo , Lianli Gao , Jingkuan Song , Peng Wang , Nicu Sebe , Heng Tao Shen , Xuelong Li