English
Related papers

Related papers: An AI-powered Knowledge Hub for Potato Functional …

200 papers

Retrieval-Augmented Generation (RAG) has gained significant attention in recent years for its potential to enhance natural language understanding and generation by combining large-scale retrieval systems with generative models. RAG…

Computation and Language · Computer Science 2025-03-18 Mingyue Cheng , Yucong Luo , Jie Ouyang , Qi Liu , Huijie Liu , Li Li , Shuo Yu , Bohou Zhang , Jiawei Cao , Jie Ma , Daoyu Wang , Enhong Chen

PubTator 3.0 (https://www.ncbi.nlm.nih.gov/research/pubtator3/) is a biomedical literature resource using state-of-the-art AI techniques to offer semantic and relation searches for key concepts like proteins, genetic variants, diseases, and…

Computation and Language · Computer Science 2024-01-23 Chih-Hsuan Wei , Alexis Allot , Po-Ting Lai , Robert Leaman , Shubo Tian , Ling Luo , Qiao Jin , Zhizheng Wang , Qingyu Chen , Zhiyong Lu

This paper presents an experience report on the development of Retrieval Augmented Generation (RAG) systems using PDF documents as the primary data source. The RAG architecture combines generative capabilities of Large Language Models…

Software Engineering · Computer Science 2024-10-22 Ayman Asad Khan , Md Toufique Hasan , Kai Kristian Kemell , Jussi Rasku , Pekka Abrahamsson

This project investigates the efficacy of Large Language Models (LLMs) in understanding and extracting scientific knowledge across specific domains and to create a deep learning framework: Knowledge AI. As a part of this framework, we…

Computation and Language · Computer Science 2024-08-12 Balaji Muralidharan , Hayden Beadles , Reza Marzban , Kalyan Sashank Mupparaju

Our ability to continuously acquire, organize, and leverage knowledge is a key feature of human intelligence that AI systems must approximate to unlock their full potential. Given the challenges in continual learning with large language…

Computation and Language · Computer Science 2025-06-23 Bernal Jiménez Gutiérrez , Yiheng Shu , Weijian Qi , Sizhe Zhou , Yu Su

In human activity recognition (HAR), the limited availability of annotated data presents a significant challenge. Drawing inspiration from the latest advancements in generative AI, including Large Language Models (LLMs) and motion synthesis…

Computer Vision and Pattern Recognition · Computer Science 2023-10-19 Zikang Leng , Hyeokhyen Kwon , Thomas Plötz

The advancement in generative AI could be boosted with more accessible mathematics. Beyond human-AI chat, large language models (LLMs) are emerging in programming, algorithm discovery, and theorem proving, yet their genomics application is…

Other Quantitative Biology · Quantitative Biology 2023-07-07 Melanie Swan , Takashi Kido , Eric Roland , Renato P. dos Santos

Large Language Models (LLMs) are widely used in critical fields such as healthcare, education, and finance due to their remarkable proficiency in various language-related tasks. However, LLMs are prone to generating factually incorrect…

Computation and Language · Computer Science 2023-11-27 Muneeswaran I , Shreya Saxena , Siva Prasad , M V Sai Prakash , Advaith Shankar , Varun V , Vishal Vaddina , Saisubramaniam Gopalakrishnan

Large Language Models (LLMs) have enabled a wide range of applications through their powerful capabilities in language understanding and generation. However, as LLMs are trained on static corpora, they face difficulties in addressing…

Computation and Language · Computer Science 2025-10-13 Yongjie Wang , Yue Yu , Kaisong Song , Jun Lin , Zhiqi Shen

Biological systems can be studied at multiple levels of information, including gene, protein, RNA and different interaction networks levels. The goal of this work is to explore how the fusion of systems' level information with temporal…

Genomics · Quantitative Biology 2023-02-09 Jan Kralj , Blaž Škrlj , Živa Ramšak , Nada Lavrač , Kristina Gruden

The recently developed retrieval-augmented generation (RAG) technology has enabled the efficient construction of domain-specific applications. However, it also has limitations, including the gap between vector similarity and the relevance…

The integration of external knowledge through Retrieval-Augmented Generation (RAG) has become foundational in enhancing large language models (LLMs) for knowledge-intensive tasks. However, existing RAG paradigms often overlook the cognitive…

Artificial Intelligence · Computer Science 2025-09-24 Yu Wang , Shiwan Zhao , Zhihu Wang , Ming Fan , Xicheng Zhang , Yubo Zhang , Zhengfan Wang , Heyuan Huang , Ting Liu

This study presents a method for implementing generative AI services by utilizing the Large Language Models (LLM) application architecture. With recent advancements in generative AI technology, LLMs have gained prominence across various…

Artificial Intelligence · Computer Science 2024-01-03 Cheonsu Jeong

Large pre-trained language models have been shown to store factual knowledge in their parameters, and achieve state-of-the-art results when fine-tuned on downstream NLP tasks. However, their ability to access and precisely manipulate…

With the rapid advancement of large language models (LLMs), there is a pressing need for a comprehensive evaluation suite to assess their capabilities and limitations. Existing LLM leaderboards often reference scores reported in other…

Computation and Language · Computer Science 2024-04-03 Shen Zheng , Yuyu Zhang , Yijie Zhu , Chenguang Xi , Pengyang Gao , Xun Zhou , Kevin Chen-Chuan Chang

Accurate interpretation of lab results is crucial in clinical medicine, yet most patient portals use universal normal ranges, ignoring conditional factors like age and gender. This study introduces Lab-AI, an interactive system that offers…

Computation and Language · Computer Science 2025-04-25 Xiaoyu Wang , Haoyong Ouyang , Balu Bhasuran , Xiao Luo , Karim Hanna , Mia Liza A. Lustria , Carl Yang , Zhe He

The advancement of artificial intelligence (AI) hinges on the quality and accessibility of data, yet the current fragmentation and variability of data sources hinder efficient data utilization. The dispersion of data sources and diversity…

Digital Libraries · Computer Science 2024-07-22 Conghui He , Wei Li , Zhenjiang Jin , Chao Xu , Bin Wang , Dahua Lin

Effective data-driven biomedical discovery requires data curation: a time-consuming process of finding, organizing, distilling, integrating, interpreting, annotating, and validating diverse information into a structured form suitable for…

Iterative retrieval refers to the process in which the model continuously queries the retriever during generation to enhance the relevance of the retrieved knowledge, thereby improving the performance of Retrieval-Augmented Generation…

Computation and Language · Computer Science 2024-12-02 Tian Yu , Shaolei Zhang , Yang Feng

Implementing Retrieval-Augmented Generation (RAG) systems is inherently complex, requiring deep understanding of data, use cases, and intricate design decisions. Additionally, evaluating these systems presents significant challenges,…

Computation and Language · Computer Science 2024-08-06 Daniel Fleischer , Moshe Berchansky , Moshe Wasserblat , Peter Izsak