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We introduce optimal transport (OT) as a physics-based intermediate event representation for weakly supervised anomaly detection. With only $0.5\%$ injection of resonant signals in the LHC Olympics benchmark datasets, the OT-augmented…

High Energy Physics - Phenomenology · Physics 2026-03-20 Tianji Cai , Aditya Bhargava , Benjamin Nachman

Selecting prototypical examples from a source distribution to represent a target data distribution is a fundamental problem in machine learning. Existing subset selection methods often rely on implicit importance scores, which can be skewed…

Out-of-distribution (OOD) detection is crucial for ensuring the reliability and safety of machine learning models in real-world applications. While zero-shot OOD detection, which requires no training on in-distribution (ID) data, has become…

Computer Vision and Pattern Recognition · Computer Science 2025-05-21 Yu Liu , Hao Tang , Haiqi Zhang , Jing Qin , Zechao Li

We present Optimal Transport GAN (OT-GAN), a variant of generative adversarial nets minimizing a new metric measuring the distance between the generator distribution and the data distribution. This metric, which we call mini-batch energy…

Machine Learning · Computer Science 2018-03-16 Tim Salimans , Han Zhang , Alec Radford , Dimitris Metaxas

Comparing probability distributions is a fundamental problem in data sciences. Simple norms and divergences such as the total variation and the relative entropy only compare densities in a point-wise manner and fail to capture the geometric…

In this paper, we study the Entropic Martingale Optimal Transport (EMOT) problem on \mathbb{R}. The investigation of the EMOT problem arises in the calibration problem of the Stochastic Volatility Models, where martingale constraints…

Probability · Mathematics 2026-02-16 Fan Chen , Giovanni Conforti , Zhenjie Ren , Xiaozhen Wang

Moving mesh methods are designed to redistribute a mesh in a regular way. This applied problem can be considered to overlap with the problem of finding a diffeomorphic mapping between density measures. In applications, an off-the-shelf grid…

Numerical Analysis · Mathematics 2021-12-23 Axel G. R. Turnquist

Recent studies have proposed different methods to improve multilingual word representations in contextualized settings including techniques that align between source and target embedding spaces. For contextualized embeddings, alignment…

Computation and Language · Computer Science 2026-03-20 Sawsan Alqahtani , Garima Lalwani , Yi Zhang , Salvatore Romeo , Saab Mansour

Entropic regularization is quickly emerging as a new standard in optimal transport (OT). It enables to cast the OT computation as a differentiable and unconstrained convex optimization problem, which can be efficiently solved using the…

Machine Learning · Statistics 2018-02-21 Mathieu Blondel , Vivien Seguy , Antoine Rolet

Root-mean-square deviation (RMSD) is widely used to assess structural similarity in systems ranging from flexible ligand conformers to complex molecular cluster configurations. Despite its wide utility, RMSD calculation is often challenged…

Biomolecules · Quantitative Biology 2025-09-03 Xiaoqi Wei , Xuhang Dai , Yaqi Wu , Yanxiang Zhao , Yingkai Zhang , Zixuan Cang

Multimodal data is a precious asset enabling a variety of downstream tasks in machine learning. However, real-world data collected across different modalities is often not paired, which is a significant challenge to learn a joint…

Machine Learning · Computer Science 2025-08-11 Mustapha Bounoua , Giulio Franzese , Pietro Michiardi

Multimarginal optimal transport (MOT) is a powerful framework for modeling interactions between multiple distributions, yet its applicability is bottlenecked by a high computational overhead. Entropic regularization provides computational…

Machine Learning · Computer Science 2025-06-03 Dor Tsur , Ziv Goldfeld , Kristjan Greenewald , Haim Permuter

Inverse optimal transport (OT) refers to the problem of learning the cost function for OT from observed transport plan or its samples. In this paper, we derive an unconstrained convex optimization formulation of the inverse OT problem,…

Machine Learning · Computer Science 2021-07-06 Shaojun Ma , Haodong Sun , Xiaojing Ye , Hongyuan Zha , Haomin Zhou

Neural representations for 3D meshes are emerging as an effective solution for compact storage and efficient processing. Existing methods often rely on neural overfitting, where a coarse mesh is stored and progressively refined through…

Computer Vision and Pattern Recognition · Computer Science 2025-11-25 Xiang Gao , Yuanpeng Liu , Xinmu Wang , Jiazhi Li , Minghao Guo , Yu Guo , Xiyun Song , Heather Yu , Zhiqiang Lao , Xianfeng David Gu

We propose a framework for solving evolution equations within parametric function classes, especially ones that are specified by neural networks. We call this framework the minimal neural evolution (MNE) because it is motivated by the goal…

Numerical Analysis · Mathematics 2025-02-07 Michael Lindsey

Protein sequence alignment is a cornerstone of bioinformatics, traditionally approached using dynamic programming (DP) algorithms that find an optimal sequential path. This paper introduces UniOTalign, a novel framework that recasts…

Quantitative Methods · Quantitative Biology 2025-10-09 Yue Hu , Zanxia Cao , Yingchao Liu

We introduce OpSets, an executable framework for specifying and reasoning about the semantics of replicated datatypes that provide eventual consistency in a distributed system, and for mechanically verifying algorithms that implement these…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-05-15 Martin Kleppmann , Victor B. F. Gomes , Dominic P. Mulligan , Alastair R. Beresford

The design of artificial neural networks (ANNs) is inspired by the structure of the human brain, and in turn, ANNs offer a potential means to interpret and understand brain signals. Existing methods primarily align brain signals with…

Neurons and Cognition · Quantitative Biology 2025-10-08 Yang Xiao , Wang Lu , Jie Ji , Ruimeng Ye , Gen Li , Xiaolong Ma , Bo Hui

Despite the rapid development of large language models (LLMs), a fundamental challenge persists: the lack of high-quality optimization modeling datasets hampers LLMs' robust modeling of practical optimization problems from natural language…

Artificial Intelligence · Computer Science 2025-02-24 Hongliang Lu , Zhonglin Xie , Yaoyu Wu , Can Ren , Yuxuan Chen , Zaiwen Wen

This article introduces a new notion of optimal transport (OT) between tensor fields, which are measures whose values are positive semidefinite (PSD) matrices. This "quantum" formulation of OT (Q-OT) corresponds to a relaxed version of the…

Graphics · Computer Science 2017-07-25 Gabriel Peyré , Lenaïc Chizat , François-Xavier Vialard , Justin Solomon