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Many systems may switch to an undesired state due to internal failures or external perturbations, of which critical transitions toward degraded ecosystem states are a prominent example. Resilience restoration focuses on the ability of…

Populations and Evolution · Quantitative Biology 2021-12-23 Cheng Ma , Gyorgy Korniss , Boleslaw K. Szymanski , Jianxi Gao

Based on the heuristics that maintaining presumptions can be beneficial in uncertain environments, we propose a set of basic axioms for learning systems to incorporate the concept of prejudice. The simplest, memoryless model of a…

Adaptation and Self-Organizing Systems · Physics 2007-05-23 Andreas U. Schmidt

We review the mathematical formalism underlying the modelling of stochasticity in biological systems. Beginning with a description of the system in terms of its basic constituents, we derive the mesoscopic equations governing the dynamics…

Populations and Evolution · Quantitative Biology 2012-11-05 Alan J. McKane , Tommaso Biancalani , Tim Rogers

We consider a coarse-grained description of a system of self-propelled particles given by hydrodynamic equations for the density and polarization fields. We find that the ordered moving or flocking state of the system is unstable to spatial…

Statistical Mechanics · Physics 2013-05-29 Shradha Mishra , Aparna Baskaran , M. Cristina Marchetti

Inspired by the swarming or flocking of animal systems we study groups of agents moving in unbounded 2D space. Individual trajectories derive from a ``bottom-up'' principle: individuals reorient to maximise their future path entropy over…

Statistical Mechanics · Physics 2023-04-21 Harvey L. Devereux , Matthew S. Turner

In this thesis we aim to analyze and quantify the energetic and information contents that can be extracted from a dynamical system subject to the external environment. The latter is usually assumed to be deleterious for the feasibility of…

Quantum Physics · Physics 2018-05-07 Stefano Gherardini

A theory of structure is formulated for systems of many structureless classical particles with stable local interactions in Euclidean space. Such systems are shown to have their structure in thermodynamic equilibrium determined exactly by a…

Statistical Mechanics · Physics 2026-02-12 John Çamkıran , Fabian Parsch , Glenn D. Hibbard

Diffusion models (DMs) are a powerful generative framework that have attracted significant attention in recent years. However, the high computational cost of training DMs limits their practical applications. In this paper, we start with a…

Machine Learning · Computer Science 2024-04-12 Tianshuo Xu , Peng Mi , Ruilin Wang , Yingcong Chen

Experiments and simulations have established that dynamics in a class of living and abiotic systems that are far from equilibrium exhibit super diffusive behavior at long times, which in some cases (for example evolving tumor) is preceded…

Statistical Mechanics · Physics 2019-03-06 Himadri S. Samanta , D. Thirumalai

We construct the hydrodynamic theory of coherent collective motion ("flocking") at a solid-liquid interface. The polar order parameter and concentration of a collection of "active" (self-propelled) particles at a planar interface between a…

Soft Condensed Matter · Physics 2022-01-05 Niladri Sarkar , Abhik Basu , John Toner

Disordered many-body systems exhibit a wide range of emergent phenomena across different scales. These complex behaviors can be utilized for various information processing tasks such as error correction, learning, and optimization. Despite…

Disordered Systems and Neural Networks · Physics 2023-08-04 Weishun Zhong

Neural-network models of high-level brain functions such as memory recall and reasoning often rely on the presence of stochasticity. The majority of these models assumes that each neuron in the functional network is equipped with its own…

Neurons and Cognition · Quantitative Biology 2022-05-17 Jakob Jordan , Mihai A. Petrovici , Oliver Breitwieser , Johannes Schemmel , Karlheinz Meier , Markus Diesmann , Tom Tetzlaff

We theoretically study the decoherence of a two-level quantum system coupled to noisy environments exhibiting linear and quadratic fluctuations within the framework of a stochastic Liouville equation. It is shown that the intrinsic energy…

Quantum Physics · Physics 2024-07-26 Xiangji Cai , Yanyan Feng , Jing Ren , Yonggang Peng , Yujun Zheng

Observing finite regions of a bigger system is a common experience, from microscopy to molecular simulations. In the latter especially, there is ongoing interest in predicting thermodynamic properties from tracking fluctuations in finite…

Soft Condensed Matter · Physics 2023-02-08 Thê Hoang Ngoc Minh , Benjamin Rotenberg , Sophie Marbach

Glass transitions are widely observed in various types of soft matter systems. However, the physical mechanism of these transitions remains {elusive}, despite years of ambitious research. In particular, an important unanswered question is…

Disordered Systems and Neural Networks · Physics 2022-12-20 Norihiro Oyama , Shihori Koyama , Takeshi Kawasaki

Many approaches to modelling reaction-diffusion systems with anomalous transport rely on deterministic equations and ignore fluctuations arising due to finite particle numbers. Starting from an individual-based model we use a…

Statistical Mechanics · Physics 2019-05-29 Joseph W. Baron , Tobias Galla

Inspired by one--dimensional light--particle systems, the dynamics of a non-Hamiltonian system with long--range forces is investigated. While the molecular dynamics does not reach an equilibrium state, it may be approximated in the…

Statistical Mechanics · Physics 2019-01-23 Romain Bachelard , Nicola Piovella , Shamik Gupta

At large scales of space and time, the nonequilibrium dynamics of local observables in extensive many-body systems is well described by hydrodynamics. At the Euler scale, one assumes that each mesoscopic region independently reaches a state…

Statistical Mechanics · Physics 2023-07-26 Benjamin Doyon , Gabriele Perfetto , Tomohiro Sasamoto , Takato Yoshimura

The collective motion of interacting self-driven particles describes many types of coordinated dynamics and self-organisation. Prominent examples are alignment or lane formation which can be observed alongside other ordered structures and…

Adaptation and Self-Organizing Systems · Physics 2022-02-24 Basma Khelfa , Raphael Korbmacher , Andreas Schadschneider , Antoine Tordeux

Hydrodynamic noise is the Gaussian process that emerges at larges scales of space and time in many-body systems. It is justified by the central limit theorem, and represents degrees of freedom forgotten when projecting coarse-grained…

Statistical Mechanics · Physics 2026-04-15 Benjamin Doyon