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Biological systems commonly exhibit complex spatiotemporal patterns whose underlying generative mechanisms pose a significant analytical challenge. Traditional approaches to spatiodynamic inference rely on dimensionality reduction through…

Quantitative Methods · Quantitative Biology 2025-08-01 Jun Won Park , Kangyu Zhao , Sanket Rane

The demand for high-quality medical imaging in clinical practice and assisted diagnosis has made 3D image reconstruction in radiological imaging a key research focus. Artificial intelligence (AI) has emerged as a promising approach for…

Computer Vision and Pattern Recognition · Computer Science 2026-04-29 Yuezhe Yang , Lei Bi , Boyu Yang , Yaqian Wang , Yang He , Yige Peng , Zhe Jin , Xingbo Dong , Jinman Kim

Given a 3D surface defined by an elevation function on a 2D grid as well as non-spatial features observed at each pixel, the problem of surface segmentation aims to classify pixels into contiguous classes based on both non-spatial features…

Computer Vision and Pattern Recognition · Computer Science 2020-08-27 Wenchong He , Arpan Man Sainju , Zhe Jiang , Da Yan

In the field of computer vision, unsupervised learning for 2D object generation has advanced rapidly in the past few years. However, 3D object generation has not garnered the same attention or success as its predecessor. To facilitate novel…

Computer Vision and Pattern Recognition · Computer Science 2020-07-29 Devendra K. Jangid , Neal R. Brodnik , Amil Khan , McLean P. Echlin , Tresa M. Pollock , Sam Daly , B. S. Manjunath

Magnetic Particle Imaging is an emerging imaging modality through which it is possible to detect tracers containing superparamagnetic nanoparticles. The exposure of the particles to dynamic magnetic fields generates a non-linear response…

Numerical Analysis · Mathematics 2024-06-19 Vladyslav Gapyak , Thomas März , Andreas Weinmann

Deep learning has proven to yield fast and accurate predictions of quantum-chemical properties to accelerate the discovery of novel molecules and materials. As an exhaustive exploration of the vast chemical space is still infeasible, we…

Machine Learning · Statistics 2020-01-10 Niklas W. A. Gebauer , Michael Gastegger , Kristof T. Schütt

Artificial intelligence for scientific discovery has recently generated significant interest within the machine learning and scientific communities, particularly in the domains of chemistry, biology, and material discovery. For these…

We present a novel method for characterizing the microstructure of a material from volumetric datasets such as 3D image data from computed tomography (CT). The method is based on a new statistical model for the distribution of voxel…

Materials Science · Physics 2021-01-06 Elise Otterlei Brenne , Vedrana Andersen Dahl , Peter Stanley Jørgensen

High-quality 3D reconstruction of pulmonary segments plays a crucial role in segmentectomy and surgical planning for the treatment of lung cancer. Due to the resolution requirement of the target reconstruction, conventional deep…

Graphics · Computer Science 2025-12-16 Kangxian Xie , Yufei Zhu , Kaiming Kuang , Li Zhang , Hongwei Bran Li , Mingchen Gao , Jiancheng Yang

Complex biological networks are fundamental to biomedical science, capturing interactions among molecules, cells, genes, and tissues. Deciphering these networks is critical for understanding health and disease, yet their scale and…

Machine Learning · Computer Science 2025-12-09 Sakib Mostafa , Lei Xing , Md. Tauhidul Islam

We introduce a novel framework for learning vector representations of tree-structured geometric data focusing on 3D vascular networks. Our approach employs two sequentially trained Transformer-based autoencoders. In the first stage, the…

Image and Video Processing · Electrical Eng. & Systems 2025-06-16 James Batten , Michiel Schaap , Matthew Sinclair , Ying Bai , Ben Glocker

There is a warning light for the loss of plant habitats worldwide that entails concerted efforts to conserve plant biodiversity. Thus, plant species classification is of crucial importance to address this environmental challenge. In recent…

Computer Vision and Pattern Recognition · Computer Science 2021-09-03 Boi M. Quach , Dinh V. Cuong , Nhung Pham , Dang Huynh , Binh T. Nguyen

A fundamental goal of research in molecular biology is to understand protein structure. Protein crystallography is currently the most successful method for determining the three-dimensional (3D) conformation of a protein, yet it remains…

Artificial Intelligence · Computer Science 2014-11-17 L. Leherte , J. Glasgow , K. Baxter , E. Steeg , S. Fortier

Sketch-based modeling strives to bring the ease and immediacy of drawing to the 3D world. However, while drawings are easy for humans to create, they are very challenging for computers to interpret due to their sparsity and ambiguity. We…

Graphics · Computer Science 2018-06-20 Johanna Delanoy , Mathieu Aubry , Phillip Isola , Alexei A. Efros , Adrien Bousseau

Functional-structural models provide detailed representations of tree growth and their application to forestry seems full of prospects. However, owing to the complexity of tree architecture, parametric identification of such models remains…

Dynamical Systems · Mathematics 2010-10-26 Veronique Letort , Paul-Henry Cournède , Amélie Mathieu , Philippe De Reffye , Thiéry Constant

We present an approach to match partially occluded plant leaves with databases of full plant leaves. Although contour based 2D shape matching has been studied extensively in the last couple of decades, matching occluded leaves with full…

Computer Vision and Pattern Recognition · Computer Science 2017-07-05 Ayan Chaudhury , John L. Barron

Technology to recognize the type of component represented by a point cloud is required in the reconstruction process of an as-built model of a process plant based on laser scanning. The reconstruction process of a process plant through…

Computer Vision and Pattern Recognition · Computer Science 2019-12-30 Hyungki Kim , Duhwan Mun

Problems of linear system identification have closed-form solutions, e.g., using least-squares or maximum-likelihood methods on input-output data. However, already the seemingly simplest problems of nonlinear system identification present…

Signal Processing · Electrical Eng. & Systems 2024-12-11 Svantje Voit , Gerald Enzner

Crop yield estimation is a relevant problem in agriculture, because an accurate yield estimate can support farmers' decisions on harvesting or precision intervention. Robots can help to automate this process. To do so, they need to be able…

Computer Vision and Pattern Recognition · Computer Science 2025-06-27 Matteo Sodano , Federico Magistri , Elias Marks , Fares Hosn , Aibek Zurbayev , Rodrigo Marcuzzi , Meher V. R. Malladi , Jens Behley , Cyrill Stachniss

Molecular and morphological characters, as important parts of biological taxonomy, are contradictory but need to be integrated. Organism's image recognition and bioinformatics are emerging and hot problems nowadays but with a gap between…

Computer Vision and Pattern Recognition · Computer Science 2022-06-29 Jiewen Xiao , Wenbin Liao , Ming Zhang , Jing Wang , Jianxin Wang , Yihua Yang
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