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Related papers: The quest for the GRAph Level autoEncoder (GRALE)

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We propose a recipe on how to build a general, powerful, scalable (GPS) graph Transformer with linear complexity and state-of-the-art results on a diverse set of benchmarks. Graph Transformers (GTs) have gained popularity in the field of…

Machine Learning · Computer Science 2023-01-18 Ladislav Rampášek , Mikhail Galkin , Vijay Prakash Dwivedi , Anh Tuan Luu , Guy Wolf , Dominique Beaini

Positional encodings (PEs) are essential for effective graph representation learning because they provide position awareness in inherently position-agnostic transformer architectures and increase the expressive capacity of Graph Neural…

Machine Learning · Computer Science 2025-02-04 Charilaos I. Kanatsoulis , Evelyn Choi , Stephanie Jegelka , Jure Leskovec , Alejandro Ribeiro

Recently there has been a surge of interest in designing graph embedding methods. Few, if any, can scale to a large-sized graph with millions of nodes due to both computational complexity and memory requirements. In this paper, we relax…

Artificial Intelligence · Computer Science 2020-08-17 Jiongqian Liang , Saket Gurukar , Srinivasan Parthasarathy

Node representation learning on attributed graphs -- whose nodes are associated with rich attributes (e.g., texts and protein sequences) -- plays a crucial role in many important downstream tasks. To encode the attributes and graph…

Machine Learning · Computer Science 2025-06-04 Zhihao Shi , Jie Wang , Fanghua Lu , Hanzhu Chen , Defu Lian , Zheng Wang , Jieping Ye , Feng Wu

Machine learning on graphs is an important and ubiquitous task with applications ranging from drug design to friendship recommendation in social networks. The primary challenge in this domain is finding a way to represent, or encode, graph…

Social and Information Networks · Computer Science 2018-04-11 William L. Hamilton , Rex Ying , Jure Leskovec

Graph anomaly detection is a popular and vital task in various real-world scenarios, which has been studied for several decades. Recently, many studies extending deep learning-based methods have shown preferable performance on graph anomaly…

Machine Learning · Computer Science 2025-05-13 Jing Ren , Mingliang Hou , Zhixuan Liu , Xiaomei Bai

Graph foundation models represent a transformative paradigm for learning transferable representations across diverse graph domains. Recent methods leverage large language models to unify graph and text modalities into a shared…

Machine Learning · Computer Science 2025-12-23 Heng Zhang , Tianyi Zhang , Yuling Shi , Xiaodong Gu , Yaomin Shen , Haochen You , Zijian Zhang , Yilei Yuan , Jin Huang

In recent years, there has been a notable surge in research on machine learning techniques for combinatorial optimization. It has been shown that learning-based methods outperform traditional heuristics and mathematical solvers on the…

Machine Learning · Computer Science 2024-03-05 Shiqing Liu , Xueming Yan , Yaochu Jin

We present a framework for learning Node Embeddings from Static Subgraphs (NESS) using a graph autoencoder (GAE) in a transductive setting. NESS is based on two key ideas: i) Partitioning the training graph to multiple static, sparse…

Machine Learning · Computer Science 2023-05-24 Talip Ucar

We present Graph Attention Collaborative Similarity Embedding (GACSE), a new recommendation framework that exploits collaborative information in the user-item bipartite graph for representation learning. Our framework consists of two parts:…

Information Retrieval · Computer Science 2021-02-08 Jinbo Song , Chao Chang , Fei Sun , Zhenyang Chen , Guoyong Hu , Peng Jiang

Graph Contrastive Learning (GCL) has recently made progress as an unsupervised graph representation learning paradigm. GCL approaches can be categorized into augmentation-based and augmentation-free methods. The former relies on complex…

Machine Learning · Computer Science 2025-04-25 Yanan Zhao , Feng Ji , Kai Zhao , Xuhao Li , Qiyu Kang , Wenfei Liang , Yahya Alkhatib , Xingchao Jian , Wee Peng Tay

Real-world dynamic graphs are often directed, with source and destination nodes exhibiting asymmetrical behavioral patterns and temporal dynamics. However, existing dynamic graph architectures largely rely on shared parameters for…

Machine Learning · Computer Science 2026-02-27 Tyler Bonnet , Marek Rei

Fault classification in industrial machinery is vital for enhancing reliability and reducing downtime, yet it remains challenging due to the variability of vibration patterns across diverse operating conditions. This study introduces a…

Machine Learning · Computer Science 2025-04-15 Moirangthem Tiken Singh

Hypergraphs play a pivotal role in the modelling of data featuring higher-order relations involving more than two entities. Hypergraph neural networks emerge as a powerful tool for processing hypergraph-structured data, delivering…

Machine Learning · Computer Science 2024-06-04 Zexi Liu , Bohan Tang , Ziyuan Ye , Xiaowen Dong , Siheng Chen , Yanfeng Wang

Scalar coupling constant (SCC) plays a key role in the analysis of three-dimensional structure of organic matter, however, the traditional SCC prediction using quantum mechanical calculations is very time-consuming. To calculate SCC…

Machine Learning · Computer Science 2020-09-11 Caiqing Jian , Xinyu Cheng , Jian Zhang , Lihui Wang

HyperGraph Convolutional Neural Networks (HGCNNs) have demonstrated their potential in modeling high-order relations preserved in graph structured data. However, most existing convolution filters are localized and determined by the…

Machine Learning · Computer Science 2021-06-11 Jiying Zhang , Yuzhao Chen , Xi Xiao , Runiu Lu , Shu-Tao Xia

With the rapid growth of graph-structured data in critical domains, unsupervised graph-level anomaly detection (UGAD) has become a pivotal task. UGAD seeks to identify entire graphs that deviate from normal behavioral patterns. However,…

Machine Learning · Computer Science 2025-11-07 Qingfeng Chen , Haojin Zeng , Jingyi Jie , Shichao Zhang , Debo Cheng

Graph autoencoders (Graph-AEs) learn representations of given graphs by aiming to accurately reconstruct them. A notable application of Graph-AEs is graph-level anomaly detection (GLAD), whose objective is to identify graphs with anomalous…

Machine Learning · Computer Science 2024-10-29 Sunwoo Kim , Soo Yong Lee , Fanchen Bu , Shinhwan Kang , Kyungho Kim , Jaemin Yoo , Kijung Shin

Graphs or networks are a very convenient way to represent data with lots of interaction. Recently, Machine Learning on Graph data has gained a lot of traction. In particular, vertex classification and missing edge detection have very…

Machine Learning · Computer Science 2020-09-07 Simon Brandeis , Adrian Jarret , Pierre Sevestre

Learning representations on large-sized graphs is a long-standing challenge due to the inter-dependence nature involved in massive data points. Transformers, as an emerging class of foundation encoders for graph-structured data, have shown…

Machine Learning · Computer Science 2024-08-19 Qitian Wu , Wentao Zhao , Chenxiao Yang , Hengrui Zhang , Fan Nie , Haitian Jiang , Yatao Bian , Junchi Yan