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Graph-based retrieval-augmented generation (GraphRAG) exploits structured knowledge to support knowledge-intensive reasoning. However, most existing methods treat graphs as intermediate artifacts, and the few subgraph-based retrieval…

Information Retrieval · Computer Science 2026-03-10 Haonan Yuan , Qingyun Sun , Junhua Shi , Mingjun Liu , Jiaqi Yuan , Ziwei Zhang , Xingcheng Fu , Jianxin Li

Circuit representation learning has shown promise in advancing Electronic Design Automation (EDA) by capturing structural and functional circuit properties for various tasks. Existing pre-trained solutions rely on graph learning with…

Hardware Architecture · Computer Science 2025-04-15 Wenji Fang , Wenkai Li , Shang Liu , Yao Lu , Hongce Zhang , Zhiyao Xie

A new heuristic based on vertex invariants is developed to rapidly distinguish non-isomorphic graphs to a desired level of accuracy. The method is applied to sample subgraphs from an E.coli protein interaction network, and as a probe for…

Quantitative Methods · Quantitative Biology 2009-11-13 Kim Baskerville , Maya Paczuski

Design patterns being applied more and more to solve the software engineering difficulties in the object oriented software design procedures. So, the design pattern detection is widely used by software industries. Currently, many solutions…

Software Engineering · Computer Science 2014-08-27 Afnan Salem Ba-Brahem , M. Rizwan Jameel Qureshi

This paper presents an advanced DAG-based algorithm for datapath synthesis that targets area minimization using logic-level resource sharing. The problem of identifying common specification logic is formulated using unweighted graph…

Hardware Architecture · Computer Science 2017-09-01 Cunxi Yu , Mihir Choudhury , Andrew Sullivan , Maciej Ciesielski

Structural features are important features in a geometrical graph. Although there are some correlation analysis of features based on covariance, there is no relevant research on structural feature correlation analysis with graph neural…

Machine Learning · Computer Science 2022-05-03 Jiaqing Xie , Rex Ying

Feature models are used to specify variability of user-configurable systems as appearing, e.g., in software product lines. Software product lines are supposed to be long-living and, therefore, have to continuously evolve over time to meet…

Software Engineering · Computer Science 2016-04-04 Frederik Deckwerth , Géza Kulcsár , Malte Lochau , Gergely Varró , Andy Schürr

Graph embedding algorithms are used to efficiently represent (encode) a graph in a low-dimensional continuous vector space that preserves the most important properties of the graph. One aspect that is often overlooked is whether the graph…

Machine Learning · Computer Science 2020-01-31 Zekarias T. Kefato , Nasrullah Sheikh , Alberto Montresor

We present the first parallel fixed-parameter algorithm for subgraph isomorphism in planar graphs, bounded-genus graphs, and, more generally, all minor-closed graphs of locally bounded treewidth. Our randomized low depth algorithm has a…

Data Structures and Algorithms · Computer Science 2020-07-03 Lukas Gianinazzi , Torsten Hoefler

Protecting sensitive program content is a critical issue in various situations, ranging from legitimate use cases to unethical contexts. Obfuscation is one of the most used techniques to ensure such protection. Consequently, attackers must…

Cryptography and Security · Computer Science 2025-04-03 Roxane Cohen , Robin David , Florian Yger , Fabrice Rossi

Recently, one has seen a surge of interest in developing such methods including ones for learning such representations for (undirected) graphs (while preserving important properties). However, most of the work to date on embedding graphs…

Social and Information Networks · Computer Science 2018-11-30 Jiankai Sun , Srinivasan Parthasarathy

A widely used strategy to discover and understand language model mechanisms is circuit analysis. A circuit is a minimal subgraph of a model's computation graph that executes a specific task. We identify a gap in existing circuit discovery…

Machine Learning · Computer Science 2025-02-10 Tal Haklay , Hadas Orgad , David Bau , Aaron Mueller , Yonatan Belinkov

What is the best way to match the nodes of two graphs? This graph alignment problem generalizes graph isomorphism and arises in applications from social network analysis to bioinformatics. Some solutions assume that auxiliary information on…

Information Retrieval · Computer Science 2021-06-14 Judith Hermanns , Anton Tsitsulin , Marina Munkhoeva , Alex Bronstein , Davide Mottin , Panagiotis Karras

New algorithms for embedding graphs have reduced the asymptotic complexity of finding low-dimensional representations. One-Hot Graph Encoder Embedding (GEE) uses a single, linear pass over edges and produces an embedding that converges…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-02-08 Ariel Lubonja , Cencheng Shen , Carey Priebe , Randal Burns

We propose a new family of combinatorial inference problems for graphical models. Unlike classical statistical inference where the main interest is point estimation or parameter testing, combinatorial inference aims at testing the global…

Statistics Theory · Mathematics 2018-02-14 Matey Neykov , Junwei Lu , Han Liu

Graph Neural Networks (GNNs) have emerged as a powerful category of learning architecture for handling graph-structured data. However, existing GNNs typically ignore crucial structural characteristics in node-induced subgraphs, which thus…

Machine Learning · Computer Science 2023-06-13 Kaixuan Chen , Shunyu Liu , Tongtian Zhu , Tongya Zheng , Haofei Zhang , Zunlei Feng , Jingwen Ye , Mingli Song

Large language models (LLMs) have been proposed as powerful tools for detecting software vulnerabilities, where task-specific fine-tuning is typically employed to provide vulnerability-specific knowledge to the LLMs. However, existing…

Software Engineering · Computer Science 2025-07-22 Ruijun Feng , Hammond Pearce , Pietro Liguori , Yulei Sui

Software systems can be represented as graphs, capturing dependencies among functions and processes. An interesting aspect of software systems is that they can be represented as different types of graphs, depending on the extraction goals…

Machine Learning · Computer Science 2025-10-14 Kartikeya Aneja , Nagender Aneja , Murat Kantarcioglu

Classical graph matching aims to find a node correspondence between two unlabeled graphs of known topologies. This problem has a wide range of applications, from matching identities in social networks to identifying similar biological…

Signal Processing · Electrical Eng. & Systems 2024-10-28 Hang Liu , Anna Scaglione , Hoi-To Wai

Embedding models have demonstrated strong performance in tasks like clustering, retrieval, and feature extraction while offering computational advantages over generative models and cross-encoders. Benchmarks such as MTEB have shown that…

Software Engineering · Computer Science 2025-08-28 Zhuohao Li , Wenqing Chen , Jianxing Yu , Zhichao Lu