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Related papers: Asymptotic Robustness in Biochemical Systems

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Absolute concentration robustness (ACR) is a condition wherein a species in a chemical kinetic system possesses the same value for any positive steady state the network may admit regardless of initial conditions. Thus far, results on ACR…

Dynamical Systems · Mathematics 2020-04-02 Noel T. Fortun , Eduardo R. Mendoza

Motivated by the question of how biological systems maintain homeostasis in changing environments, Shinar and Feinberg introduced in 2010 the concept of absolute concentration robustness (ACR). A biochemical system exhibits ACR in some…

Biochemical systems that express certain chemical species of interest at the same level at any positive equilibrium are called "absolute concentration robust" (ACR). These species behave in a stable, predictable way, in the sense that their…

Subcellular Processes · Quantitative Biology 2019-10-15 Daniele Cappelletti , Ankit Gupta , Mustafa Khammash

Robustness of biochemical systems has become one of the central questions in Systems Biology, although it is notoriously difficult to formally capture its multifaceted nature. Maintenance of normal system function depends not only on the…

Molecular Networks · Quantitative Biology 2012-03-28 Jost Neigenfind , Sergio Grimbs , Zoran Nikoloski

A reaction system exhibits "absolute concentration robustness" (ACR) in some species if the positive steady-state value of that species does not depend on initial conditions. Mathematically, this means that the positive part of the variety…

Dynamical Systems · Mathematics 2022-06-08 Nicolette Meshkat , Anne Shiu , Angélica Torres

For reaction networks arising in systems biology, the capacity for two or more steady states, that is, multistationarity, is an important property that underlies biochemical switches. Another property receiving much attention recently is…

Probability · Mathematics 2023-01-26 Badal Joshi , Nidhi Kaihnsa , Tung D. Nguyen , Anne Shiu

Recent research in both the experimental and mathematical communities has focused on biochemical interaction systems that satisfy an "absolute concentration robustness" (ACR) property. The ACR property was first discovered experimentally…

Probability · Mathematics 2018-05-22 David F. Anderson , Daniele Cappelletti , Thomas G. Kurtz

Absolute Concentration Robustness (ACR) was introduced by Shinar and Feinberg as robustness of equilibrium species concentration in a mass action dynamical system. Their aim was to devise a mathematical condition that will ensure robustness…

Dynamical Systems · Mathematics 2022-11-16 Badal Joshi , Gheorghe Craciun

Networks with absolute concentration robustness (ACR) have the property that a translation of a coordinate hyperplane either contains all steady states (static ACR) or attracts all trajectories (dynamic ACR). The implication for the…

Dynamical Systems · Mathematics 2022-06-22 Badal Joshi , Gheorghe Craciun

Many reaction networks arising in applications are multistationary, that is, they have the capacity for more than one steady state; while some networks exhibit absolute concentration robustness (ACR), which means that some species…

Dynamical Systems · Mathematics 2024-11-20 Nidhi Kaihnsa , Tung Nguyen , Anne Shiu

A kinetic system has an absolute concentration robustness (ACR) for a molecular species if its concentration remains the same in every positive steady state of the system. Just recently, a condition that sufficiently guarantees the…

Dynamical Systems · Mathematics 2023-04-10 Eduardo R. Mendoza , Dylan Antonio SJ. Talabis , Editha C. Jose , Lauro L. Fontanil

Absolute concentration robustness (ACR) means the concentration of certain species stays the same in all the steady states. In this work, we study how conservation laws might effect non-vacuous ACR in reaction networks. The goal is to show…

Molecular Networks · Quantitative Biology 2026-04-23 Xinyi Si , Xiaoxian Tang

In this work, we design a type of controller that consists of adding a specific set of reactions to an existing mass-action chemical reaction network in order to control a target species. This set of reactions is effective for both…

Molecular Networks · Quantitative Biology 2020-07-27 Jinsu Kim , German Enciso

Robustness against the presence of environmental disruptions can be observed in many systems of chemical reaction network. However, identifying the underlying components of a system that give rise to robustness is often elusive. The…

Dynamical Systems · Mathematics 2020-03-31 Noel T. Fortun , Angelyn R. Lao , Luis F. Razon , Eduardo R. Mendoza

We study the robustness of the steady states of a class of systems of autonomous ordinary differential equations (ODEs), having as a central example those arising from (bio)chemical reaction networks. More precisely, we study under what…

Algebraic Geometry · Mathematics 2021-08-09 B. Pascual-Escudero , E. Feliu

In a reaction network, the concentration of a species with the property of dynamic absolute concentration robustness (dynamic ACR) converges to the same value independent of the overall initial values. This property endows a biochemical…

Dynamical Systems · Mathematics 2023-09-26 Badal Joshi , Gheorghe Craciun

Bifunctional enzymes, which catalyze both the forward and reverse steps of a substrate modification reaction, arise naturally in bacterial two-component signaling systems and metabolic regulation. Beyond their well-known role in conferring…

Dynamical Systems · Mathematics 2026-05-13 Badal Joshi , Tung D. Nguyen , Matthew D. Johnston

Chemical reaction networks (CRN) comprise an important class of models to understand biological functions such as cellular information processing, the robustness and control of metabolic pathways, circadian rhythms, and many more. However,…

Molecular Networks · Quantitative Biology 2025-03-25 Dimitri Loutchko , Yuki Sughiyama , Tetsuya J. Kobayashi

Absolute concentration robustness (ACR) and concordance are novel concepts in the theory of robustness and stability within Chemical Reaction Network Theory. In this paper, we have extended Shinar and Feinberg's reaction network analysis…

Molecular Networks · Quantitative Biology 2022-09-14 Patrick Vincent N. Lubenia , Eduardo R. Mendoza , Angelyn R. Lao

Homeostasis occurs in a biological system when a chosen output variable remains approximately constant despite changes in an input variable. In this work we specifically focus on biological systems which may be represented as chemical…

Quantitative Methods · Quantitative Biology 2024-07-19 Jiaxin Jin , Grzegorz A. Rempala
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