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Functional Magnetic Resonance Imaging (fMRI) provides dynamical access into the complex functioning of the human brain, detailing the hemodynamic activity of thousands of voxels during hundreds of sequential time points. One approach…

Neurons and Cognition · Quantitative Biology 2008-01-16 Francois G. Meyer , Greg J. Stephens

Inferring the functional specificity of brain regions from functional Magnetic Resonance Images (fMRI) data is a challenging statistical problem. While the General Linear Model (GLM) remains the standard approach for brain mapping,…

Machine Learning · Computer Science 2012-07-17 Fabian Pedregosa , Alexandre Gramfort , Gaël Varoquaux , Bertrand Thirion , Christophe Pallier , Elodie Cauvet

Understanding how the brain encodes external stimuli and how these stimuli can be decoded from the measured brain activities are long-standing and challenging questions in neuroscience. In this paper, we focus on reconstructing the complex…

Neurons and Cognition · Quantitative Biology 2022-10-05 Sikun Lin , Thomas Sprague , Ambuj K Singh

Decoding brain functional states underlying different cognitive processes using multivariate pattern recognition techniques has attracted increasing interests in brain imaging studies. Promising performance has been achieved using brain…

Computer Vision and Pattern Recognition · Computer Science 2018-09-18 Hongming Li , Yong Fan

This literature review will discuss the use of deep learning methods for image reconstruction using fMRI data. More specifically, the quality of image reconstruction will be determined by the choice in decoding and reconstruction…

Computer Vision and Pattern Recognition · Computer Science 2021-08-10 Madison Van Horn

Many recent studies have shown that the perception of speech can be decoded from brain signals and subsequently reconstructed as continuous language. However, there is a lack of neurological basis for how the semantic information embedded…

Computation and Language · Computer Science 2026-04-14 Congchi Yin , Ziyi Ye , Piji Li

Aggregating multi-subject functional magnetic resonance imaging (fMRI) data is indispensable for generating valid and general inferences from patterns distributed across human brains. The disparities in anatomical structures and functional…

Machine Learning · Computer Science 2019-11-20 Weida Li , Mingxia Liu , Fang Chen , Daoqiang Zhang

Decoding brain imaging data are gaining popularity, with applications in brain-computer interfaces and the study of neural representations. Decoding is typicallysubject-specific and does not generalise well over subjects, due to high…

Machine Learning · Computer Science 2024-01-22 Richard Csaky , Mats Van Es , Oiwi Parker Jones , Mark Woolrich

Denoising language models (DLMs) have been proposed as a powerful alternative to traditional language models (LMs) for automatic speech recognition (ASR), motivated by their ability to use bidirectional context and adapt to a specific ASR…

Neural and Evolutionary Computing · Computer Science 2025-12-16 Dorian Koch , Albert Zeyer , Nick Rossenbach , Ralf Schlüter , Hermann Ney

As a technology to read brain states from measurable brain activities, brain decoding are widely applied in industries and medical sciences. In spite of high demands in these applications for a universal decoder that can be applied to all…

Machine Learning · Statistics 2015-02-03 Sotetsu Koyamada , Yumi Shikauchi , Ken Nakae , Masanori Koyama , Shin Ishii

A fundamental challenge in neuroscience is to decode mental states from brain activity. While functional magnetic resonance imaging (fMRI) offers a non-invasive approach to capture brain-wide neural dynamics with high spatial precision,…

Image and Video Processing · Electrical Eng. & Systems 2025-07-31 Yueh-Po Peng , Vincent K. M. Cheung , Li Su

Human speakers encode information into raw speech which is then decoded by the listeners. This complex relationship between encoding (production) and decoding (perception) is often modeled separately. Here, we test how encoding and decoding…

Computation and Language · Computer Science 2022-09-20 Gašper Beguš , Alan Zhou

Decoding functional magnetic resonance imaging (fMRI) signals into text has been a key challenge in the neuroscience community, with the potential to advance brain-computer interfaces and uncover deeper insights into brain mechanisms.…

Neurons and Cognition · Quantitative Biology 2025-06-10 Weikang Qiu , Zheng Huang , Haoyu Hu , Aosong Feng , Yujun Yan , Rex Ying

Brain encoding and decoding aims to understand the relationship between external stimuli and brain activities, and is a fundamental problem in neuroscience. In this article, we study latent embedding alignment for brain encoding and…

Methodology · Statistics 2026-03-24 Shuoxun Xu , Zhanhao Yan , Lexin Li

Decoding strategies for generative large language models (LLMs) are a critical but often underexplored aspect of text generation tasks. Guided by specific hyperparameters, these strategies aim to transform the raw probability distributions…

Computation and Language · Computer Science 2024-12-17 Esteban Garces Arias , Meimingwei Li , Christian Heumann , Matthias Aßenmacher

AI-based neural decoding reconstructs visual perception by leveraging generative models to map brain activity, measured through functional MRI (fMRI), into latent hierarchical representations. Traditionally, ridge linear models transform…

Image and Video Processing · Electrical Eng. & Systems 2025-09-04 Lorenzo Veronese , Andrea Moglia , Luca Mainardi , Pietro Cerveri

Despite the remarkable advances in language modeling, current mainstream decoding methods still struggle to generate texts that align with human texts across different aspects. In particular, sampling-based methods produce less-repetitive…

Computation and Language · Computer Science 2024-06-06 Haozhe Ji , Pei Ke , Hongning Wang , Minlie Huang

Extracting information from functional magnetic resonance (fMRI) images has been a major area of research for more than two decades. The goal of this work is to present a new method for the analysis of fMRI data sets, that is capable to…

In daily life, we encounter diverse external stimuli, such as images, sounds, and videos. As research in multimodal stimuli and neuroscience advances, fMRI-based brain decoding has become a key tool for understanding brain perception and…

Computer Vision and Pattern Recognition · Computer Science 2025-03-21 Pengyu Liu , Guohua Dong , Dan Guo , Kun Li , Fengling Li , Xun Yang , Meng Wang , Xiaomin Ying

Disentangling the encodings of neural models is a fundamental aspect for improving interpretability, semantic control and downstream task performance in Natural Language Processing. Currently, most disentanglement methods are unsupervised…

Computation and Language · Computer Science 2023-02-17 Danilo S. Carvalho , Giangiacomo Mercatali , Yingji Zhang , Andre Freitas