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Attention-based graph neural networks (GNNs), such as graph attention networks (GATs), have become popular neural architectures for processing graph-structured data and learning node embeddings. Despite their empirical success, these models…

Machine Learning · Statistics 2023-06-07 Dexiong Chen , Paolo Pellizzoni , Karsten Borgwardt

Graph Neural Networks (GNNs) have experienced rapid advancements in recent years due to their ability to learn meaningful representations from graph data structures. Federated Learning (FL) has emerged as a viable machine learning approach…

Distributed, Parallel, and Cluster Computing · Computer Science 2025-06-17 Pranjal Naman , Yogesh Simmhan

Learning representations of nodes has been a crucial area of the graph machine learning research area. A well-defined node embedding model should reflect both node features and the graph structure in the final embedding. In the case of…

Machine Learning · Computer Science 2023-04-20 Kamil Tagowski , Piotr Bielak , Jakub Binkowski , Tomasz Kajdanowicz

Graph Neural Networks (GNNs) show strong expressive power on graph data mining, by aggregating information from neighbors and using the integrated representation in the downstream tasks. The same aggregation methods and parameters for each…

Machine Learning · Computer Science 2022-03-22 Xiaojun Ma , Qin Chen , Yuanyi Ren , Guojie Song , Liang Wang

Graph Neural Networks (GNNs) are powerful deep learning methods for Non-Euclidean data. Popular GNNs are message-passing algorithms (MPNNs) that aggregate and combine signals in a local graph neighborhood. However, shallow MPNNs tend to…

Machine Learning · Statistics 2022-11-08 Ningyuan Huang , Soledad Villar , Carey E. Priebe , Da Zheng , Chengyue Huang , Lin Yang , Vladimir Braverman

Graph convolutional network (GCN) is an emerging neural network approach. It learns new representation of a node by aggregating feature vectors of all neighbors in the aggregation process without considering whether the neighbors or…

Machine Learning · Computer Science 2022-04-01 Li Zhang , Heda Song , Nikolaos Aletras , Haiping Lu

Recent advances in data processing have stimulated the demand for learning graphs of very large scales. Graph Neural Networks (GNNs), being an emerging and powerful approach in solving graph learning tasks, are known to be difficult to…

Machine Learning · Computer Science 2023-06-02 Ningyi Liao , Dingheng Mo , Siqiang Luo , Xiang Li , Pengcheng Yin

Network topology excels at structural predictions but fails to capture functional semantics encoded in biomedical literature. We present RAG-GNN, an end-to-end trainable retrieval-augmented graph neural network framework that integrates GNN…

Molecular Networks · Quantitative Biology 2026-05-14 Hasi Hays , William J. Richardson

Recently, text classification model based on graph neural network (GNN) has attracted more and more attention. Most of these models adopt a similar network paradigm, that is, using pre-training node embedding initialization and two-layer…

Computation and Language · Computer Science 2023-01-26 Jiayuan Chen , Boyu Zhang , Yinfei Xu , Meng Wang

Feature extraction and dimension reduction for networks is critical in a wide variety of domains. Efficiently and accurately learning features for multiple graphs has important applications in statistical inference on graphs. We propose a…

Applications · Statistics 2021-06-23 Shangsi Wang , Jesús Arroyo , Joshua T. Vogelstein , Carey E. Priebe

Graph data often exhibits complex geometric heterogeneity, where structures with varying local curvature, such as tree-like hierarchies and dense communities, coexist within a single network. Existing geometric GNNs, which embed graphs into…

Machine Learning · Computer Science 2026-01-21 Xudong Wang , Chris Ding , Tongxin Li , Jicong Fan

Graph neural network (GNN) has gained increasing popularity in recent years owing to its capability and flexibility in modeling complex graph structure data. Among all graph learning methods, hypergraph learning is a technique for exploring…

Machine Learning · Computer Science 2024-12-31 Tiehua Zhang , Yuze Liu , Zhishu Shen , Xingjun Ma , Peng Qi , Zhijun Ding , Jiong Jin

Graph neural networks (GNNs) have significantly improved the representation power for graph-structured data. Despite of the recent success of GNNs, the graph convolution in most GNNs have two limitations. Since the graph convolution is…

Machine Learning · Computer Science 2021-12-30 Jinyoung Park , Sungdong Yoo , Jihwan Park , Hyunwoo J. Kim

Network embedding aims to find a way to encode network by learning an embedding vector for each node in the network. The network often has property information which is highly informative with respect to the node's position and role in the…

Social and Information Networks · Computer Science 2018-11-28 Enya Shen , Zhidong Cao , Changqing Zou , Jianmin Wang

Current graph representation learning techniques use Graph Neural Networks (GNNs) to extract features from dataset embeddings. In this work, we examine the quality of these embeddings and assess how changing them can affect the accuracy of…

Machine Learning · Computer Science 2022-11-30 S. Purchase , A. Zhao , R. D. Mullins

Graph neural networks (GNNs) realize great success in graph learning but suffer from performance loss when meeting heterophily, i.e. neighboring nodes are dissimilar, due to their local and uniform aggregation. Existing attempts of…

Machine Learning · Computer Science 2026-04-14 Haoyu Liu , Ningyi Liao , Siqiang Luo

Graph neural networks (GNNs) have demonstrated remarkable success in graph representation learning, and various sampling approaches have been proposed to scale GNNs to applications with large-scale graphs. A class of promising GNN training…

Machine Learning · Computer Science 2024-10-10 Rui Xue , Tong Zhao , Neil Shah , Xiaorui Liu

Graph neural networks (GNNs) have achieved remarkable success in relational learning. However, their vulnerability to graph backdoor attacks (GBAs) poses a significant barrier to broader adoption in high-stakes applications. Despite recent…

Cryptography and Security · Computer Science 2026-05-26 Mengting Pan , Fan Li , Chen Chen , Xiaoyang Wang

Graph neural networks (GNNs) have emerged as the state of the art for a variety of graph-related tasks and have been widely used in Heterogeneous Graphs (HetGs), where meta-paths help encode specific semantics between various node types.…

Machine Learning · Computer Science 2025-02-25 Xuqi Mao , Zhenying He , X. Sean Wang

Learning distributed representations of source code has been a challenging task for machine learning models. Earlier works treated programs as text so that natural language methods can be readily applied. Unfortunately, such approaches do…

Software Engineering · Computer Science 2020-05-28 Yu Wang , Fengjuan Gao , Linzhang Wang , Ke Wang
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