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We consider the constrained graph alignment problem which has applications in biological network analysis. Given two input graphs $G_1=(V_1,E_1), G_2=(V_2,E_2)$, a pair of vertex mappings induces an {\it edge conservation} if the vertex…

Data Structures and Algorithms · Computer Science 2023-06-22 Ferhat Alkan , Türker Bıyıkoğlu , Marc Demange , Cesim Erten

For various purposes and, in particular, in the context of data compression, a graph can be examined at three levels. Its structure can be described as the unlabeled version of the graph; then the labeling of its structure can be added; and…

Information Theory · Computer Science 2021-11-24 Ioannis Kontoyiannis , Yi Heng Lim , Katia Papakonstantinopoulou , Wojtek Szpankowski

Learning distributed representations for nodes in graphs is a crucial primitive in network analysis with a wide spectrum of applications. Linear graph embedding methods learn such representations by optimizing the likelihood of both…

Machine Learning · Computer Science 2018-10-16 Yihan Gao , Chao Zhang , Jian Peng , Aditya Parameswaran

Graph representation learning (GRL) has become a prominent tool for furthering the understanding of complex networks providing tools for network embedding, link prediction, and node classification. In this paper, we propose the Hybrid…

Social and Information Networks · Computer Science 2023-08-30 Nikolaos Nakis , Abdulkadir Çelikkanat , Morten Mørup

Geometric constraints impact the formation of a broad range of spatial networks, from amino acid chains folding to proteins structures to rearranging particle aggregates. How the network of interactions dynamically self-organizes in such…

Molecular Networks · Quantitative Biology 2016-10-19 Nora Molkenthin , Marc Timme

Formation control deals with the design of decentralized control laws that stabilize mobile, autonomous agents at prescribed distances from each other. We call any configuration of the agents a target configuration if it satisfies the…

Dynamical Systems · Mathematics 2016-05-23 Xudong Chen , M. -A. Belabbas , Tamer Başar

Graph embeddings have become a key and widely used technique within the field of graph mining, proving to be successful across a broad range of domains including social, citation, transportation and biological. Graph embedding techniques…

Machine Learning · Computer Science 2018-06-21 Stephen Bonner , Ibad Kureshi , John Brennan , Georgios Theodoropoulos , Andrew Stephen McGough , Boguslaw Obara

Signed graphs are graphs whose edges get a sign $+1$ or $-1$ (the signature). Signed graphs can be studied by means of graph matrices extended to signed graphs in a natural way. Recently, the spectra of signed graphs have attracted much…

Combinatorics · Mathematics 2019-07-11 Francesco Belardo , Sebastian M. Cioabă , Jack H. Koolen , Jianfeng Wang

Graph representation learning (also called graph embeddings) is a popular technique for incorporating network structure into machine learning models. Unsupervised graph embedding methods aim to capture graph structure by learning a…

Social and Information Networks · Computer Science 2022-01-24 Andrew Stolman , Caleb Levy , C. Seshadhri , Aneesh Sharma

Signed graphs are equipped with both positive and negative edge weights, encoding pairwise correlations as well as anti-correlations in data. A balanced signed graph is a signed graph with no cycles containing an odd number of negative…

Machine Learning · Computer Science 2025-06-03 Haruki Yokota , Hiroshi Higashi , Yuichi Tanaka , Gene Cheung

Spatiotemporal graph neural networks have shown to be effective in time series forecasting applications, achieving better performance than standard univariate predictors in several settings. These architectures take advantage of a graph…

Machine Learning · Computer Science 2023-11-13 Andrea Cini , Ivan Marisca , Daniele Zambon , Cesare Alippi

This paper is concerned with the controllability problem of a connected threshold graph following the Laplacian dynamics. An algorithm is proposed to generate a spanning set of orthogonal Laplacian eigenvectors of the graph from a…

Optimization and Control · Mathematics 2018-06-14 Shun-Pin Hsu

As cyber threats grow increasingly sophisticated, reinforcement learning (RL) is emerging as a promising technique to create intelligent and adaptive cyber defense systems. However, most existing autonomous defensive agents have overlooked…

Machine Learning · Computer Science 2025-04-17 Ilya Orson Sandoval , Isaac Symes Thompson , Vasilios Mavroudis , Chris Hicks

We are interested in multilayer graph clustering, which aims at dividing the graph nodes into categories or communities. To do so, we propose to learn a clustering-friendly embedding of the graph nodes by solving an optimization problem…

Machine Learning · Computer Science 2021-03-31 Mireille El Gheche , Pascal Frossard

The identification of vertices that play a central role in network analysis is a fundamental challenge. Although traditional centrality measures have been extensively employed for this purpose, the increasing complexity of modern networks…

Combinatorics · Mathematics 2026-01-07 Taiki Yamada

We prove that a planar graph is generically rigid in the plane if and only if it can be embedded as a pseudo-triangulation. This generalizes the main result of math.CO/0307347 which treats the minimally generically rigid case. The proof…

Combinatorics · Mathematics 2007-05-24 David Orden , Francisco Santos , Brigitte Servatius , Herman Servatius

Graph transformations definable in logic can be described using the notion of transductions. By understanding transductions as a basic embedding mechanism, which captures the possibility of encoding one graph in another graph by means of…

Combinatorics · Mathematics 2025-01-09 Michał Pilipczuk

As a result of the interaction of rapid development and competition in information technologies, the reliability of a network and how solid it remains is important. It is called the hat vulnerability of the network to measure the endurance…

Combinatorics · Mathematics 2021-03-15 Ersin Aslan , Ayşe Kahveci Özdemir

A graph $G=(V,E)$ is called $d$-rigid if, for a generic embedding of its vertices in $\mathbb{R}^d$, every edge-length preserving continuous motion of the vertices preserves the distances between all pairs of non-adjacent vertices as well.…

Combinatorics · Mathematics 2026-03-02 Michael Krivelevich , Alan Lew , Peleg Michaeli

Recent research on graph embedding has achieved success in various applications. Most graph embedding methods preserve the proximity in a graph into a manifold in an embedding space. We argue an important but neglected problem about this…

Machine Learning · Computer Science 2020-12-01 Hongbin Pei , Bingzhe Wei , Kevin Chen-Chuan Chang , Chunxu Zhang , Bo Yang