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The formation of local denaturation zones (bubbles) in double-stranded DNA is an important example for conformational changes of biological macromolecules. We study the dynamics of bubble formation in terms of a Fokker-Planck equation for…

Soft Condensed Matter · Physics 2009-11-10 Andreas Hanke , Ralf Metzler

We study the dynamics of a particle in continuous time and space, the displacement of which is governed by an internal degree of freedom (spin). In one definite limit, the so-called quantum random walk is recovered but, although quite…

Quantum Physics · Physics 2009-11-10 Claude Aslangul

We study a coupled dynamics of a network and a particle system. Particles of density $\rho$ diffuse freely along edges, each of which is rewired at a rate given by a decreasing function of particle flux. We find that the coupled dynamics…

Statistical Mechanics · Physics 2008-03-24 Sang-Woo Kim , Jae Dong Noh

Single-file transport in pore-like structures constitute an important topic for both theory and experiment. For hardcore interacting particles, a good understanding of the collective dynamics has been achieved recently. Here we study how…

Statistical Mechanics · Physics 2021-12-28 Alexander P. Antonov , Artem Ryabov , Philipp Maass

Active Brownian particles (ABPs) represent a minimal model of active matter consisting of self-propelled spheres with purely repulsive interactions and rotational noise. Here, we examine the pressure of ABPs in two dimensions in both closed…

Soft Condensed Matter · Physics 2017-01-11 Adam Patch , David Yllanes , M. Cristina Marchetti

We study the transport properties of a system of active particles moving at constant speed in an heterogeneous two-dimensional space. The spatial heterogeneity is modeled by a random distribution of obstacles, which the active particles…

Biological Physics · Physics 2013-10-23 Oleksandr Chepizhko , Fernando Peruani

We study experimentally and theoretically, the reorganization of superconducting vortices driven by oscillatory forces near the plastic depinning transition. We show that the system can be taken to configurations that are tagged by the…

Superconductivity · Physics 2011-08-01 D. Pérez Daroca , G. Pasquini , G. S. Lozano , V. Bekeris

Dense suspensions of self-propelled rod-like particles exhibit a fascinating variety of non-equilibrium phenomena. By means of computer simulations of a minimal model for rigid self-propelled colloidal rods with variable shape we explore…

Soft Condensed Matter · Physics 2015-06-04 H. H. Wensink , H. Löwen

We compare experimental data and numerical simulations for the dynamics of inertial particles with finite density in turbulence. In the experiment, bubbles and solid particles are optically tracked in a turbulent flow of water using an…

Chaotic Dynamics · Physics 2008-08-28 R. Volk , E. Calzavarini , G. Verhille , D. Lohse , N. Mordant , J. -F. Pinton , F. Toschi

Breakup of drop/bubble can be viewed as a result of fundamental force balance when the disruptive force is greater than the restorative force. A disruptive force acting on the drop/bubble tries to deform it, whereas a restorative force…

Fluid Dynamics · Physics 2017-01-24 Suhas Jain S

Cells and other soft particles are often forced to flow in confined geometries in both laboratory and natural environments, where the elastic deformation induces an additional drag and pressure drop across the particle. In contrast with…

Fluid Dynamics · Physics 2025-07-09 Charles Paul Moore , Hiba Belkadi , Brouna Safi , Gabriel Amselem , Charles N. Baroud

The stochastic dynamics of tracers arising from hydrodynamic fluctuations in a driven electrolyte is studied using a self-consistent field-theory framework in all dimensions. A plethora of scaling behaviour that includes two distinct…

Soft Condensed Matter · Physics 2026-02-12 Ramin Golestanian

Active matter deals with systems whose particles consume energy at the individual level in order to move. To unravel features such as the emergence of collective structures several models have been suggested, such as the on-lattice model of…

In this work, we perform numerical simulations of forced two-phase isotropic turbulence to study the stationary states of a two-phase mixture. We first formulate three different approaches to force a two-phase turbulent flow that maintains…

Fluid Dynamics · Physics 2025-04-08 Suhas S Jain , Ahmed Elnahhas

We examine the dynamics of a single colloidal particle driven through a colloidal lattice which can distort in response to the driven particle. We find a remarkably rich variety of dynamical locking phenomena as we vary the angle of the…

Soft Condensed Matter · Physics 2009-11-10 C. Reichhardt , C. J. Olson Reichhardt

There are rich emergent phase behaviors in non-equilibrium active systems. Flocking and clustering are two representative dynamic phases. The relationship between these two phases is still unclear. In the paper, we numerically investigate…

Soft Condensed Matter · Physics 2023-08-09 Lu Chen , Bokai Zhang , Z. C. Tu

A recently introduced active phase field crystal model describes the formation of ordered resting and traveling crystals in systems of self-propelled particles. Increasing the active drive, a resting crystal can be forced to perform…

Soft Condensed Matter · Physics 2014-02-18 Andreas M. Menzel , Takao Ohta , Hartmut Löwen

We review the depinning and nonequilibrium phases of collectively interacting particle systems driven over random or periodic substrates. This type of system is relevant to vortices in type-II superconductors, sliding charge density waves,…

Superconductivity · Physics 2017-12-06 C. Reichhardt , C. J. Olson Reichhardt

Shapes and paths of an air bubble rising inside a liquid are investigated experimentally. About three hundred experiments are conducted in order to generate a phase plot in the Galilei and Eotvos numbers plane, which separates distinct…

Fluid Dynamics · Physics 2018-10-23 DM Sharaf , A R Premlata , Manoj Kumar Tripathi , Badarinath Karri , Kirti Chandra Sahu

We investigate the dynamics of an intruder pulled by a constant force in a dense two-dimensional granular fluid by means of event-driven molecular dynamics simulations. In a first step, we show how a propagating momentum front develops and…

Statistical Mechanics · Physics 2012-02-29 Andrea Fiege , Matthias Grob , Annette Zippelius