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Ecosystems, which are intricate amalgams of biological communities and their surrounding environments, continually evolve under the influence of their myriad interactions. The world is currently facing intensifying environmental…

Biological Physics · Physics 2023-11-23 Ikumi Kobayashi

Plant phenotyping (Guo et al. 2021; Pieruschka et al. 2019) focuses on studying the diverse traits of plants related to the plants' growth. To be more specific, by accurately measuring the plant's anatomical, ontogenetical, physiological…

Machine Learning · Computer Science 2022-01-17 Jun Wu , Elizabeth A. Ainsworth , Sheng Wang , Kaiyu Guan , Jingrui He

Changes in the frequency, duration, and severity of climate extremes are forecast to occur under global climate change. The impacts of climate extremes on forest productivity and health are complicated by potential interactions with…

Ecosystems display a complex spatial organization. Ecologists have long tried to characterize them by looking at how different measures of biodiversity change across spatial scales. Ecological neutral theory has provided simple predictions…

Populations and Evolution · Quantitative Biology 2017-12-13 Simone Pigolotti , Massimo Cencini , Daniel Molina , Miguel A. Muñoz

Phylogenomics is a new field which applies to tools in phylogenetics to genome data. Due to a new technology and increasing amount of data, we face new challenges to analyze them over a space of phylogenetic trees. Because a space of…

Combinatorics · Mathematics 2020-05-15 Ruriko Yoshida

Ecological systems show a variety of characteristic patterns of biodiversity in space and time. It is a challenge for theory to find models that can reproduce and explain the observed patterns. Since the advent of island biogeography these…

Populations and Evolution · Quantitative Biology 2019-10-21 Michaela Hamm , Barbara Drossel

Climate models play a crucial role in understanding the effect of environmental and man-made changes on climate to help mitigate climate risks and inform governmental decisions. Large global climate models such as the Community Earth System…

Applications · Statistics 2020-12-02 Niccolò Dalmasso , Galen Vincent , Dorit Hammerling , Ann B. Lee

Ecological networks allow us to study the structure and function of ecosystems and gain insights on species resilience/stability. The study of this ecological networks is usually a snapshop focused in a limited specific range of space and…

Populations and Evolution · Quantitative Biology 2014-07-17 Andrzej Jarynowski , Fco. Alejandro Lopez-Nunez , Han Fan

Plants solve complex problems without centralized control, relying instead on growth-driven dynamics to sense, navigate, and optimize resource acquisition. This review presents a unified physical framework for understanding plant behavior…

Other Condensed Matter · Physics 2026-04-24 Yasmine Meroz

Predicting the adaptation of populations to a changing environment is crucial to assess the impact of human activities on biodiversity. Many theoretical studies have tackled this issue by modeling the evolution of quantitative traits…

Analysis of PDEs · Mathematics 2022-06-28 Jimmy Garnier , O Cotto , T Bourgeron , E Bouin , T Lepoutre , O Ronce , V Calvez

Tropical forests represent the home of many species on the planet for flora and fauna, retaining billions of tons of carbon footprint, promoting clouds and rain formation, implying a crucial role in the global ecosystem, besides…

Computer Vision and Pattern Recognition · Computer Science 2022-08-24 Guilherme A. Pimenta , Fernanda B. J. R. Dallaqua , Alvaro Fazenda , Fabio A. Faria

This thesis focuses on the applications of mathematical tools and concepts brought from nonequilibrium statistical physics to the modeling of ecological problems. The first part provides a short introduction where the theoretical concepts…

Populations and Evolution · Quantitative Biology 2017-01-12 Ricardo Martinez-Garcia

We develop an theoretical approach for predicting biodiversity in multi-dimensional niche spaces, arising due to ecological drivers such as competitive exclusion. The novelty of our approach relies on the fact that ecological niches are…

Populations and Evolution · Quantitative Biology 2015-06-11 Tommaso Biancalani , Lee DeVille , Nigel Goldenfeld

This work intends to lay the foundations for identifying the prevailing forest types and the delineation of forest units within private forest inventories in the Autonomous Province of Trento (PAT), using currently available remote sensing…

Computer Vision and Pattern Recognition · Computer Science 2023-01-10 Daniele Michelini , Michele Dalponte , Angelo Carriero , Erico Kutchart , Salvatore Eugenio Pappalardo , Massimo De Marchi , Francesco Pirotti

Earth observation data have shown promise in predicting species richness of vascular plants ($\alpha$-diversity), but extending this approach to large spatial scales is challenging because geographically distant regions may exhibit…

Machine Learning · Computer Science 2025-03-12 Yiqing Guo , Karel Mokany , Shaun R. Levick , Jinyan Yang , Peyman Moghadam

Adaptation in a fluctuating environment is a process of fueling environmental information to gain fitness. Living systems have gradually developed strategies for adaptation from random and passive diversification of the phenotype to more…

Populations and Evolution · Quantitative Biology 2017-07-12 Tetsuya J. Kobayashi , Yuki Sughiyama

Vegetation patterns are abundant in arid and semiarid ecosystems, but how they form remains unclear. One of the most extended theories lies in the existence of scale-dependent feedbacks (SDF) in plant-to-plant and plant-water interactions.…

Populations and Evolution · Quantitative Biology 2018-01-08 Ricardo Martinez-Garcia , Cristobal Lopez

Ecological communities are composed of species interactions that respond to environmental fluctuations. Despite increasing evidence of temporal variation in these interactions, most theoretical frameworks remain rooted in static…

Complex network theory provides an important tool for the analysis of complex systems such as the Earth's climate. In this context, functional climate networks can be constructed using a spatiotemporal climate dataset and a suitable time…

Data Analysis, Statistics and Probability · Physics 2021-09-22 Leonardo N. Ferreira , Nicole C. R. Ferreira , Elbert E. N. Macau , Reik V. Donner

Much of our understanding of ecological and evolutionary mechanisms derives from analysis of low-dimensional models: with few interacting species, or few axes defining "fitness". It is not always clear to what extent the intuition derived…

Populations and Evolution · Quantitative Biology 2018-02-14 Mikhail Tikhonov , Remi Monasson