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Graph-structured data are pervasive across domains including social networks, biological networks, and knowledge graphs. Due to their non-Euclidean nature, such data pose significant challenges to conventional machine learning methods. This…

Machine Learning · Computer Science 2025-07-29 Yihan Wang , Jianing Zhao

Graph Neural Networks (GNNs) often struggle with heterophilic data, where connected nodes may have dissimilar labels, as they typically assume homophily and rely on local message passing. To address this, we propose creating alternative…

Machine Learning · Computer Science 2025-06-11 Victor M. Tenorio , Madeline Navarro , Samuel Rey , Santiago Segarra , Antonio G. Marques

Representing and learning from graphs is essential for developing effective machine learning models tailored to non-Euclidean data. While Graph Neural Networks (GNNs) strive to address the challenges posed by complex, high-dimensional graph…

Quantum Physics · Physics 2025-01-15 Wenxuan Wang

Dynamic Graph Neural Networks (DyGNNs) have garnered increasing research attention for learning representations on evolving graphs. Despite their effectiveness, the limited expressive power of existing DyGNNs hinders them from capturing…

Machine Learning · Computer Science 2024-10-03 Zhe Wang , Tianjian Zhao , Zhen Zhang , Jiawei Chen , Sheng Zhou , Yan Feng , Chun Chen , Can Wang

Generative modeling of graphs with spatial structure is essential across many applications from computer graphics to spatial genomics. Recent flow-based generative models have achieved impressive results by gradually adding and then…

Machine Learning · Computer Science 2025-07-15 Peter Pao-Huang , Mitchell Black , Xiaojie Qiu

Graph Neural Networks (GNNs) have made significant advances on several fundamental inference tasks. As a result, there is a surge of interest in using these models for making potentially important decisions in high-regret applications.…

Machine Learning · Computer Science 2020-02-26 Kaidi Xu , Sijia Liu , Pin-Yu Chen , Mengshu Sun , Caiwen Ding , Bhavya Kailkhura , Xue Lin

Chordal structure and bounded treewidth allow for efficient computation in numerical linear algebra, graphical models, constraint satisfaction and many other areas. In this paper, we begin the study of how to exploit chordal structure in…

Symbolic Computation · Computer Science 2017-01-03 Diego Cifuentes , Pablo Parrilo

Spectral features are widely incorporated within Graph Neural Networks (GNNs) to improve their expressive power, or their ability to distinguish among non-isomorphic graphs. One popular example is the usage of graph Laplacian eigenvectors…

Machine Learning · Computer Science 2025-09-29 Snir Hordan , Maya Bechler-Speicher , Gur Lifshitz , Nadav Dym

We investigate the enhancement of graph neural networks' (GNNs) representation power through their ability in substructure counting. Recent advances have seen the adoption of subgraph GNNs, which partition an input graph into numerous…

Machine Learning · Computer Science 2024-06-14 Zuoyu Yan , Junru Zhou , Liangcai Gao , Zhi Tang , Muhan Zhang

Graph neural networks (GNNs) are a type of neural model that tackle graphical tasks in an end-to-end manner. Recently, GNNs have been receiving increased attention in machine learning and data mining communities because of the higher…

Machine Learning · Computer Science 2023-02-07 Ayato Toyokuni , Makoto Yamada

Many real-world graphs (networks) are heterogeneous with different types of nodes and edges. Heterogeneous graph embedding, aiming at learning the low-dimensional node representations of a heterogeneous graph, is vital for various…

Social and Information Networks · Computer Science 2021-12-15 Wentao Xu , Yingce Xia , Weiqing Liu , Jiang Bian , Jian Yin , Tie-Yan Liu

This paper studies four Graph Neural Network architectures (GNNs) for a graph classification task on a synthetic dataset created using classic generative models of Network Science. Since the synthetic networks do not contain (node or edge)…

Social and Information Networks · Computer Science 2024-01-12 Walid Guettala , László Gulyás

Graph neural networks (GNNs) have become powerful tools for processing graph-based information in various domains. A desirable property of GNNs is transferability, where a trained network can swap in information from a different graph…

Machine Learning · Computer Science 2024-06-24 A. Martina Neuman , Jason J. Bramburger

In spite of the plethora of success stories with graph neural networks (GNNs) on modelling graph-structured data, they are notoriously vulnerable to over-squashing, whereby tasks necessitate the mixing of information between distance pairs…

Machine Learning · Computer Science 2025-05-20 JJ Wilson , Maya Bechler-Speicher , Petar Veličković

Graph Neural Networks (GNNs) are information processing architectures for signals supported on graphs. They are presented here as generalizations of convolutional neural networks (CNNs) in which individual layers contain banks of graph…

Machine Learning · Computer Science 2021-02-01 Luana Ruiz , Fernando Gama , Alejandro Ribeiro

Graph Neural Networks (GNNs) are a powerful tool for machine learning on graphs.GNNs combine node feature information with the graph structure by recursively passing neural messages along edges of the input graph. However, incorporating…

Machine Learning · Computer Science 2019-11-15 Rex Ying , Dylan Bourgeois , Jiaxuan You , Marinka Zitnik , Jure Leskovec

Graph Neural Networks (GNNs) have emerged as the dominant approach for machine learning on graph-structured data. However, concerns have arisen regarding the vulnerability of GNNs to small adversarial perturbations. Existing defense methods…

Machine Learning · Computer Science 2024-02-22 Sofiane Ennadir , Yassine Abbahaddou , Johannes F. Lutzeyer , Michalis Vazirgiannis , Henrik Boström

Graph-structured data ubiquitously appears in science and engineering. Graph neural networks (GNNs) are designed to exploit the relational inductive bias exhibited in graphs; they have been shown to outperform other forms of neural networks…

Machine Learning · Computer Science 2021-02-03 Veronika Thost , Jie Chen

Graph-structured data is ubiquitous in the real world, and Graph Neural Networks (GNNs) have become increasingly popular in various fields due to their ability to process such irregular data directly. However, as data scale, GNNs become…

Distributed, Parallel, and Cluster Computing · Computer Science 2026-02-10 Xianfeng Song , Yi Zou , Zheng Shi

Many complex networks, ranging from social to biological systems, exhibit structural patterns consistent with an underlying hyperbolic geometry. Revealing the dimensionality of this latent space can disentangle the structural complexity of…