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Plankton are effective indicators of environmental change and ecosystem health in freshwater habitats, but collection of plankton data using manual microscopic methods is extremely labor-intensive and expensive. Automated plankton imaging…

Computer Vision and Pattern Recognition · Computer Science 2021-10-27 S. P. Kyathanahally , T. Hardeman , E. Merz , T. Kozakiewicz , M. Reyes , P. Isles , F. Pomati , M. Baity-Jesi

Planktonic organisms are of fundamental importance to marine ecosystems: they form the basis of the food web, provide the link between the atmosphere and the deep ocean, and influence global-scale biogeochemical cycles. Scientists are…

Computer Vision and Pattern Recognition · Computer Science 2015-10-06 Eric C. Orenstein , Oscar Beijbom , Emily E. Peacock , Heidi M. Sosik

This paper considers open-set recognition (OSR) of plankton images. Plankton include a diverse range of microscopic aquatic organisms that have an important role in marine ecosystems as primary producers and as a base of food webs. Given…

Computer Vision and Pattern Recognition · Computer Science 2025-03-17 Joona Kareinen , Annaliina Skyttä , Tuomas Eerola , Kaisa Kraft , Lasse Lensu , Sanna Suikkanen , Maiju Lehtiniemi , Heikki Kälviäinen

Oceans are the essential lifeblood of the Earth: they provide over 70% of the oxygen and over 97% of the water. Plankton and corals are two of the most fundamental components of ocean ecosystems, the former due to their function at many…

Computer Vision and Pattern Recognition · Computer Science 2019-12-11 Alessandra Lumini , Loris Nanni , Gianluca Maguolo

Planktonic organisms are key components of aquatic ecosystems and respond quickly to changes in the environment, therefore their monitoring is vital to understand the changes in the environment. Yet, monitoring plankton at appropriate…

Plankton provide the foundation for life on earth. To advance our understanding of the marine ecosystem, for scientific, commercial and survival purposes, more in situ continuous monitoring and analysis of plankton is required. Cost,…

Image and Video Processing · Electrical Eng. & Systems 2020-05-28 Thomas G. Zimmerman , Vito P. Pastore , Sujoy K. Biswas , Simone Bianco

The decline of global shellfish biodiversity poses a severe threat to coastal ecosystems. Although artificial intelligence (AI) technologies show potential for automated ecological monitoring, existing marine benthic datasets often lack…

Computer Vision and Pattern Recognition · Computer Science 2026-05-11 Ziheng Zhou , Yang Wang , Nan Wang , Chengliang Wu , Jun Yan

Plankton recognition is an important computer vision problem due to plankton's essential role in ocean food webs and carbon capture, highlighting the need for species-level monitoring. However, this task is challenging due to its…

Computer Vision and Pattern Recognition · Computer Science 2025-05-12 Joona Kareinen , Tuomas Eerola , Kaisa Kraft , Lasse Lensu , Sanna Suikkanen , Heikki Kälviäinen

Marine microalgae are widespread in the ocean and play a crucial role in the ecosystem. Automatic identification and location of marine microalgae in microscopy images would help establish marine ecological environment monitoring and water…

Computer Vision and Pattern Recognition · Computer Science 2024-08-27 Shizheng Zhou , Juntao Jiang , Xiaohan Hong , Yan Hong , Pengcheng Fu

Plankton recognition provides novel possibilities to study various environmental aspects and an interesting real-world context to develop domain adaptation (DA) methods. Different imaging instruments cause domain shift between datasets…

Computer Vision and Pattern Recognition · Computer Science 2024-02-09 Daniel Batrakhanov , Tuomas Eerola , Kaisa Kraft , Lumi Haraguchi , Lasse Lensu , Sanna Suikkanen , María Teresa Camarena-Gómez , Jukka Seppälä , Heikki Kälviäinen

Zooplankton images, like many other real world data types, have intrinsic properties that make the design of effective classification systems difficult. For instance, the number of classes encountered in practical settings is potentially…

Computer Vision and Pattern Recognition · Computer Science 2019-09-26 Ketil Malde , Hyeongji Kim

The deep learning revolution is touching all scientific disciplines and corners of our lives as a means of harnessing the power of big data. Marine ecology is no exception. These new methods provide analysis of data from sensors, cameras,…

Ocean scientists have been collecting visual data to study marine organisms for decades. These images and videos are extremely valuable both for basic science and environmental monitoring tasks. There are tools for automatically processing…

Computer Vision and Pattern Recognition · Computer Science 2023-07-19 Eric Orenstein , Kevin Barnard , Lonny Lundsten , Geneviève Patterson , Benjamin Woodward , Kakani Katija

Underwater surveys provide long-term data for informing management strategies, monitoring coral reef health, and estimating blue carbon stocks. Advances in broad-scale survey methods, such as robotic underwater vehicles, have increased the…

Computer Vision and Pattern Recognition · Computer Science 2024-11-19 Scarlett Raine , Frederic Maire , Niko Suenderhauf , Tobias Fischer

Phytoplankton are a crucial component of aquatic ecosystems, and effective monitoring of them can provide valuable insights into ocean environments and ecosystem changes. Traditional phytoplankton monitoring methods are often complex and…

Computer Vision and Pattern Recognition · Computer Science 2025-01-07 Yang Yu , Yuezun Li , Xin Sun , Junyu Dong

Visual analysis of complex fish habitats is an important step towards sustainable fisheries for human consumption and environmental protection. Deep Learning methods have shown great promise for scene analysis when trained on large-scale…

Computer Vision and Pattern Recognition · Computer Science 2020-08-31 Alzayat Saleh , Issam H. Laradji , Dmitry A. Konovalov , Michael Bradley , David Vazquez , Marcus Sheaves

This paper presents the AquaMonitor dataset, the first large computer vision dataset of aquatic invertebrates collected during routine environmental monitoring. While several large species identification datasets exist, they are rarely…

Computer Vision and Pattern Recognition · Computer Science 2025-05-29 Mikko Impiö , Philipp M. Rehsen , Tiina Laamanen , Arne J. Beermann , Florian Leese , Jenni Raitoharju

The implementation of deep learning algorithms has brought new perspectives to plankton ecology. Emerging as an alternative approach to established methods, deep learning offers objective schemes to investigate plankton organisms in diverse…

Elasmobranch populations are experiencing significant global declines, and several species are currently classified as threatened. Reliable monitoring and species-level identification are essential to support conservation and spatial…

Monitoring plankton populations in situ is fundamental to preserve the aquatic ecosystem. Plankton microorganisms are in fact susceptible of minor environmental perturbations, that can reflect into consequent morphological and dynamical…

Computer Vision and Pattern Recognition · Computer Science 2022-09-15 Paolo Didier Alfano , Marco Rando , Marco Letizia , Francesca Odone , Lorenzo Rosasco , Vito Paolo Pastore
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