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We study a one-dimensional model of microtubule assembly/disassembly in which GTP bound to tubulins within the microtubule undergoes stochastic hydrolysis. In contrast to models that only consider a cap of GTP-bound tubulin, stochastic…

Biomolecules · Quantitative Biology 2015-05-13 Sumedha , Michael F Hagan , Bulbul Chakraborty

In this study, we conduct a study on magnetic hyperthermia treatment when a vessel is located near the tumor. The holistic framework is established to solve the process of tumor treatment. The interstitial tissue fluid, MNP distribution,…

As a fundamental astrophysical process, the scattering of particles by turbulent magnetic fields has its physical foundation laid by the magnetohydrodynamic (MHD) turbulence theory. In the framework of the modern theory of MHD turbulence,…

High Energy Astrophysical Phenomena · Physics 2018-11-28 Siyao Xu , Alex Lazarian

Microscale oxygenation plays a prominent role in tumour progression. Spatiotemporal variability of oxygen distribution in the tumour microenvironment contributes to cellular heterogeneity and to the emergence of normoxic and hypoxic…

Tissues and Organs · Quantitative Biology 2022-01-28 Jesús J. Bosque , Gabriel F. Calvo , María Cruz Navarro

Local cancer invasion of tissue is a complex, multiscale process which plays an essential role in tumour progression. Occurring over many different temporal and spatial scales, the first stage of invasion is the secretion of matrix…

Tissues and Organs · Quantitative Biology 2019-07-04 Robyn Shuttleworth , Dumitru Trucu

In living cells, motor proteins, such as kinesin and dynein can move processively along microtubule (MT), and also detach from or attach to MT stochastically. Experiments have found that, the traffic of motor might be jammed, and various…

Biological Physics · Physics 2015-03-06 Yunxin Zhang

The shapes of cell membranes are largely regulated by membrane associated, curvature active, proteins. We use a numerical model of the membrane with elongated membrane inclusions, recently developed by us, which posses spontaneous…

Biological Physics · Physics 2013-02-08 N. Ramakrishnan , P. B. Sunil Kumar , John H. Ipsen

Transcription is a fundamental cellular process, and the first step of gene expression. In human cells, it depends on the binding to chromatin of various proteins, including RNA polymerases and numerous transcription factors (TFs).…

Multicellular collective migration is a ubiquitous strategy of cells to translocate spatially in diverse tissue environments to accomplish a wide variety of biological phenomena, viz. embryonic development, wound healing, and tumor…

Cell Behavior · Quantitative Biology 2022-01-20 Ushasi Roy , Tyler Collins , Mohit K. Jolly , Parag Katira

Cancer invasion of the surrounding tissue is a multiscale process that involves not only tumour cells but also other immune cells in the environment, such as the tumour-associated macrophages (TAMs). The heterogeneity of these immune cells,…

Dynamical Systems · Mathematics 2021-03-08 Szabolcs Suveges , Raluca Eftimie , Dumitru Trucu

The ability to locally degrade the extracellular matrix (ECM) and interact with the tumour microenvironment is a key process distinguishing cancer from normal cells, and is a critical step in the metastatic spread of the tumour. The…

Cell Behavior · Quantitative Biology 2018-05-29 Nikolaos Sfakianakis , Anotida Madzvamuse , Mark A. J. Chaplain

Blood vessels (BVs) play a critical role in the Tumor Micro-Environment (TME), potentially influencing cancer progression and treatment response. However, manually quantifying BVs in Hematoxylin and Eosin (H&E) stained images is challenging…

Image and Video Processing · Electrical Eng. & Systems 2025-01-27 Jiaqi Lv , Stefan S Antonowicz , Shan E Ahmed Raza

The microtubule assembly process has been extensively studied, but the underlying molecular mechanism remains poorly understood. The structure of an artificially generated sheet polymer that alternates two types of lateral contacts and that…

Biomolecules · Quantitative Biology 2009-11-10 Zhanghan Wu , Hong-Wei Wang , Weihua Mu , Zhongcan Ouyang , Eva Nogales , Jianhua Xing

In scanning tunneling microscopy of molecules, an insulating buffer layer is often introduced to reduce interactions between adsorbed molecules and the substrate. Focusing on tunneling through the molecule's electronic transport gap, we…

Mesoscale and Nanoscale Physics · Physics 2024-08-02 Abhishek Grewal , Christopher C. Leon , Olle Gunnarsson

We propose a stochastic model that accounts for the growth, catastrophe and rescue processes of steady state microtubules assembled from MAP-free tubulin. Both experimentally and theoretically we study the perturbation of microtubule…

Biological Physics · Physics 2015-05-20 Peter Hinow , Vahid Rezania , Manu Lopus , Mary Ann Jordan , Jack A. Tuszynski

We present experiments on RBCs that flow through microcapillaries under physiological conditions. We show that the RBC clusters form as a subtle imbrication between hydrodynamics interaction and adhesion forces because of plasma proteins.…

Recent studies have highlighted intracellular viscosity as a key biomechanical property with potential as a biomarker for cancer cell metastasis. In the context of cellular mechanobiology, magnetic rotational spectroscopy (MRS), which…

Soft Condensed Matter · Physics 2025-12-02 Charles Paul Moore , Foad Ghasemi , Jean-François Berret

Eukaryotic cells intrinsically change their shape, by changing the composition of their membrane and by restructuring their underlying cytoskeleton. We present here further studies and extensions of a minimal physical model, describing a…

Soft Condensed Matter · Physics 2023-01-31 Yoav Ravid , Samo Penič , Yuko Mimori-Kiyosue , Shiro Suetsugu , Aleš Iglič , Nir S. Gov

Objective: The overarching objective is to make the definition of the clinical target volume (CTV) in radiation oncology less subjective and more scientifically based. The specific objective of this study is to investigate similarities and…

Medical Physics · Physics 2022-07-27 Thomas Bortfeld , Gregory Buti

Mobility of taxol inside microtubules was investigated using fluorescence recovery after photobleaching (FRAP) on flow-aligned bundles. Bundles were made of microtubules with either GMPCPP or GTP at the exchangeable site on the tubulin…

Subcellular Processes · Quantitative Biology 2009-11-10 Jennifer L. Ross , D. Kuchnir Fygenson
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