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Learning a Bayesian network (BN) from data can be useful for decision-making or discovering causal relationships. However, traditional methods often fail in modern applications, which exhibit a larger number of observed variables than data…

Computation · Statistics 2018-06-26 Raj Agrawal , Tamara Broderick , Caroline Uhler

Each training step for a variational autoencoder (VAE) requires us to sample from the approximate posterior, so we usually choose simple (e.g. factorised) approximate posteriors in which sampling is an efficient computation that fully…

Machine Learning · Statistics 2018-05-29 Laurence Aitchison , Vincent Adam , Srinivas C. Turaga

This work addresses the problem of learning directed acyclic graphs (DAGs) from nodal observations generated by a linear structural equation model. DAG learning is a central task in signal processing, machine learning, and causal inference,…

Machine Learning · Computer Science 2026-05-20 Samuel Rey , Madeline navarro , Gonzalo Mateos

Probabilistic programming frameworks are powerful tools for statistical modelling and inference. They are not immediately generalisable to phylogenetic problems due to the particular computational properties of the phylogenetic tree object.…

Populations and Evolution · Quantitative Biology 2022-11-11 Christiaan Swanepoel , Mathieu Fourment , Xiang Ji , Hassan Nasif , Marc A Suchard , Frederick A Matsen , Alexei Drummond

Directed Acyclic Graphical (DAG) models efficiently formulate causal relationships in complex systems. Traditional DAGs assume nodes to be scalar variables, characterizing complex systems under a facile and oversimplified form. This paper…

Methodology · Statistics 2024-04-23 Tian Lan , Ziyue Li , Junpeng Lin , Zhishuai Li , Lei Bai , Man Li , Fugee Tsung , Rui Zhao , Chen Zhang

This paper introduces Bayesian Flow Networks (BFNs), a new class of generative model in which the parameters of a set of independent distributions are modified with Bayesian inference in the light of noisy data samples, then passed as input…

Machine Learning · Computer Science 2025-03-12 Alex Graves , Rupesh Kumar Srivastava , Timothy Atkinson , Faustino Gomez

We describe computationally efficient methods for learning mixtures in which each component is a directed acyclic graphical model (mixtures of DAGs or MDAGs). We argue that simple search-and-score algorithms are infeasible for a variety of…

Machine Learning · Computer Science 2015-05-19 Bo Thiesson , Christopher Meek , David Maxwell Chickering , David Heckerman

We present nested sampling for factor graphs (NSFG), a novel nested sampling approach to approximate inference for posterior distributions expressed over factor-graphs. Performing such inference is a key step in simultaneous localization…

Robotics · Computer Science 2022-08-10 Qiangqiang Huang , Alan Papalia , John J. Leonard

This paper presents a framework designed to tackle a range of planning problems arise in manipulation, which typically involve complex geometric-physical reasoning related to contact and dynamic constraints. We introduce the Contact Factor…

Robotics · Computer Science 2025-03-11 Jeongmin Lee , Sunkyung Park , Minji Lee , Dongjun Lee

Speculative decoding has emerged as a promising technique to accelerate the inference of Large Language Models (LLMs) by employing a small language model to draft a hypothesis sequence, which is then validated by the LLM. The effectiveness…

Computation and Language · Computer Science 2024-07-24 Zhuocheng Gong , Jiahao Liu , Ziyue Wang , Pengfei Wu , Jingang Wang , Xunliang Cai , Dongyan Zhao , Rui Yan

Bayesian inference with computationally expensive likelihood evaluations remains a significant challenge in many scientific domains. We propose normalizing flow regression (NFR), a novel offline inference method for approximating posterior…

Machine Learning · Statistics 2025-04-17 Chengkun Li , Bobby Huggins , Petrus Mikkola , Luigi Acerbi

Directed acyclic graphs (DAGs) are commonly used to represent causal relationships among random variables in graphical models. Applications of these models arise in the study of physical, as well as biological systems, where directed edges…

Machine Learning · Statistics 2009-12-01 Ali Shojaie , George Michailidis

We consider deep multi-layered generative models such as Boltzmann machines or Hopfield nets in which computation (which implements inference) is both recurrent and stochastic, but where the recurrence is not to model sequential structure,…

Machine Learning · Computer Science 2016-06-29 Yoshua Bengio , Benjamin Scellier , Olexa Bilaniuk , Joao Sacramento , Walter Senn

Scientific workflows are often represented as directed acyclic graphs (DAGs), where vertices correspond to tasks and edges represent the dependencies between them. Since these graphs are often large in both the number of tasks and their…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-07-15 Svetlana Kulagina , Henning Meyerhenke , Anne Benoit

One of the grand challenges of cell biology is inferring the gene regulatory network (GRN) which describes interactions between genes and their products that control gene expression and cellular function. We can treat this as a causal…

Machine Learning · Computer Science 2023-12-27 Lazar Atanackovic , Alexander Tong , Bo Wang , Leo J. Lee , Yoshua Bengio , Jason Hartford

Gaussian process regression can flexibly represent the posterior distribution of an interest parameter given sufficient information on the likelihood. However, in some cases, we have little knowledge regarding the probability model. For…

Machine Learning · Computer Science 2025-07-22 Yuta Shikuri

Educational systems have traditionally been evaluated using cross-sectional studies, namely, examining a pretest, posttest, and single intervention. Although this is a popular approach, it does not model valuable information such as…

Applications · Statistics 2021-08-03 Manie Tadayon , Greg Pottie

Two fundamental problems in unsupervised learning are efficient inference for latent-variable models and robust density estimation based on large amounts of unlabeled data. Algorithms for the two tasks, such as normalizing flows and…

Machine Learning · Statistics 2018-08-02 Changyou Chen , Chunyuan Li , Liqun Chen , Wenlin Wang , Yunchen Pu , Lawrence Carin

Classifier-free Guidance (CFG) is a widely used technique in modern diffusion models for enhancing sample quality and prompt adherence. However, through an empirical analysis on Gaussian mixture modeling with a closed-form solution, we…

Computer Vision and Pattern Recognition · Computer Science 2026-03-05 Chubin Chen , Jiashu Zhu , Xiaokun Feng , Nisha Huang , Chen Zhu , Meiqi Wu , Fangyuan Mao , Jiahong Wu , Xiangxiang Chu , Xiu Li

Scalable spatial GPs for massive datasets can be built via sparse Directed Acyclic Graphs (DAGs) where a small number of directed edges is sufficient to flexibly characterize spatial dependence. The DAG can be used to devise fast algorithms…

Methodology · Statistics 2025-03-31 Michele Peruzzi , Sudipto Banerjee , David B. Dunson , Andrew O. Finley
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