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Sparse Autoencoder (SAE) has emerged as a powerful tool for mechanistic interpretability of large language models. Recent works apply SAE to protein language models (PLMs), aiming to extract and analyze biologically meaningful features from…

Quantitative Methods · Quantitative Biology 2026-01-21 Xiangyu Liu , Haodi Lei , Yi Liu , Yang Liu , Wei Hu

Autoregressive language models have demonstrated a remarkable ability to extract latent structure from text. The embeddings from large language models have been shown to capture aspects of the syntax and semantics of language. But what…

Machine Learning · Computer Science 2026-01-09 Liyi Zhang , Michael Y. Li , R. Thomas McCoy , Theodore R. Sumers , Jian-Qiao Zhu , Thomas L. Griffiths

Understanding how information is represented in neural networks is a fundamental challenge in both neuroscience and artificial intelligence. Despite their nonlinear architectures, recent evidence suggests that neural networks encode…

Machine Learning · Computer Science 2025-03-04 David Klindt , Charles O'Neill , Patrik Reizinger , Harald Maurer , Nina Miolane

Providing explanations along with predictions is crucial in some text processing tasks. Therefore, we propose a new self-interpretable model that performs output prediction and simultaneously provides an explanation in terms of the presence…

Machine Learning · Computer Science 2019-09-30 Diane Bouchacourt , Ludovic Denoyer

A common goal of mechanistic interpretability is to decompose the activations of neural networks into features: interpretable properties of the input computed by the model. Sparse autoencoders (SAEs) are a popular method for finding these…

Machine Learning · Computer Science 2025-02-10 Patrick Leask , Bart Bussmann , Michael Pearce , Joseph Bloom , Curt Tigges , Noura Al Moubayed , Lee Sharkey , Neel Nanda

The variational autoencoder (VAE) is a popular probabilistic generative model. However, one shortcoming of VAEs is that the latent variables cannot be discrete, which makes it difficult to generate data from different modes of a…

Machine Learning · Statistics 2017-11-21 Jay A. Hennig , Akash Umakantha , Ryan C. Williamson

The high-level concepts that a neural network uses to perform computation need not be aligned to individual neurons (Smolensky, 1986). Language model interpretability research has thus turned to techniques such as \textit{sparse…

Computation and Language · Computer Science 2026-02-02 Aryaman Arora , Zhengxuan Wu , Jacob Steinhardt , Sarah Schwettmann

Generative models in vision have seen rapid progress due to algorithmic improvements and the availability of high-quality image datasets. In this paper, we offer contributions in both these areas to enable similar progress in audio…

Machine Learning · Computer Science 2017-04-06 Jesse Engel , Cinjon Resnick , Adam Roberts , Sander Dieleman , Douglas Eck , Karen Simonyan , Mohammad Norouzi

The Linear Representation Hypothesis asserts that the embeddings learned by neural networks can be understood as linear combinations of features corresponding to high-level concepts. Based on this ansatz, sparse autoencoders (SAEs) have…

Machine Learning · Computer Science 2026-01-29 Chiraag Kaushik , Davis Barch , Andrea Fanelli

While concept-based interpretability methods have traditionally focused on local explanations of neural network predictions, we propose a novel framework and interactive tool that extends these methods into the domain of mechanistic…

Machine Learning · Computer Science 2025-07-09 Sofiia Chorna , Kateryna Tarelkina , Eloïse Berthier , Gianni Franchi

We propose an alternative to sparse autoencoders (SAEs) as a simple and effective unsupervised method for extracting interpretable concepts from neural networks. The core idea is to cluster differences in activations, which we formally…

Machine Learning · Computer Science 2026-02-12 Clément Cornet , Romaric Besançon , Hervé Le Borgne

Sparse Autoencoders (SAEs) have shown to find interpretable features in neural networks from polysemantic neurons caused by superposition. Previous work has shown SAEs are an effective tool to extract interpretable features from the early…

Computer Vision and Pattern Recognition · Computer Science 2025-04-17 Matthew Bozoukov

Sparse Autoencoders (SAEs) are an interpretability technique aimed at decomposing neural network activations into interpretable units. However, a major bottleneck for SAE development has been the lack of high-quality performance metrics,…

Machine Learning · Computer Science 2024-12-02 Adam Karvonen , Can Rager , Samuel Marks , Neel Nanda

Sparse autoencoders (SAEs) have recently emerged as a powerful tool for language model steering. Prior work has explored top-k SAE latents for steering, but we observe that many dimensions among the top-k latents capture non-semantic…

Computation and Language · Computer Science 2025-10-03 Jiaqing Xie

Recent years have seen a growing interest in methods for predicting an unknown variable of interest, such as a subject's diagnosis, from medical images depicting its anatomical-functional effects. Methods based on discriminative modeling…

Computer Vision and Pattern Recognition · Computer Science 2024-10-14 Chiara Mauri , Stefano Cerri , Oula Puonti , Mark Mühlau , Koen Van Leemput

Recent work in Mechanistic Interpretability (MI) has enabled the identification and intervention of internal features in Large Language Models (LLMs). However, a persistent challenge lies in linking such internal features to the reliable…

Computation and Language · Computer Science 2026-04-08 Ruikang Zhang , Shuo Wang , Qi Su

The ability of deep neural networks to learn complex data relations and representations is established nowadays, but it generally relies on large sets of training data. This work explores a "piece-specific" autoencoding scheme, in which a…

Sound · Computer Science 2022-03-09 Axel Marmoret , Jérémy E. Cohen , Frédéric Bimbot

We explore a novel way of conceptualising the task of polyphonic music transcription, using so-called invertible neural networks. Invertible models unify both discriminative and generative aspects in one function, sharing one set of…

Sound · Computer Science 2019-09-05 Rainer Kelz , Gerhard Widmer

Probabilistic generative models are attractive for scientific modeling because their inferred parameters can be used to generate hypotheses and design experiments. This requires that the learned model provide an accurate representation of…

Machine Learning · Statistics 2023-01-18 Liyun Tu , Austin Talbot , Neil Gallagher , David Carlson

Sparse autoencoders are a promising new approach for decomposing language model activations for interpretation and control. They have been applied successfully to vision transformer image encoders and to small-scale diffusion models.…

Machine Learning · Computer Science 2025-07-14 Stepan Shabalin , Ayush Panda , Dmitrii Kharlapenko , Abdur Raheem Ali , Yixiong Hao , Arthur Conmy