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Nowadays, the coupling of electronic structure and machine learning techniques serves as a powerful tool to predict chemical and physical properties of a broad range of systems. With the aim of improving the accuracy of predictions, a large…

Graph representation learning plays an important role in many graph mining applications, but learning embeddings of large-scale graphs remains a problem. Recent works try to improve scalability via graph summarization -- i.e., they learn…

Machine Learning · Computer Science 2022-07-05 Houquan Zhou , Shenghua Liu , Danai Koutra , Huawei Shen , Xueqi Cheng

Graph matching, also known as network alignment, refers to finding a bijection between the vertex sets of two given graphs so as to maximally align their edges. This fundamental computational problem arises frequently in multiple fields…

Data Structures and Algorithms · Computer Science 2021-08-10 Cheng Mao , Mark Rudelson , Konstantin Tikhomirov

This paper studies graph-based active learning, where the goal is to reconstruct a binary signal defined on the nodes of a weighted graph, by sampling it on a small subset of the nodes. A new sampling algorithm is proposed, which…

Machine Learning · Computer Science 2016-05-19 Eyal En Gad , Akshay Gadde , A. Salman Avestimehr , Antonio Ortega

Learning good quality neural graph embeddings has long been achieved by minimizing the point-wise mutual information (PMI) for co-occurring nodes in simulated random walks. This design choice has been mostly popularized by the direct…

Social and Information Networks · Computer Science 2022-08-29 Asan Agibetov

Graph Domain Adaptation (GDA) transfers knowledge from labeled source graphs to unlabeled target graphs, addressing the challenge of label scarcity. In this paper, we highlight the significance of graph homophily, a pivotal factor for graph…

Social and Information Networks · Computer Science 2025-06-03 Ruiyi Fang , Bingheng Li , Jingyu Zhao , Ruizhi Pu , Qiuhao Zeng , Gezheng Xu , Charles Ling , Boyu Wang

Given a static vertex-selection problem (e.g. independent set, dominating set) on a graph, we can define a corresponding temporally satisfying reconfiguration problem on a temporal graph which asks for a sequence of solutions to the…

Data Structures and Algorithms · Computer Science 2025-09-22 Tom Davot , Jessica Enright , Laura Larios-Jones

Graph matching is a fundamental tool in computer vision and pattern recognition. In this paper, we introduce an algorithm for graph matching based on the proximal operator, referred to as differentiable proximal graph matching (DPGM).…

Computer Vision and Pattern Recognition · Computer Science 2024-05-28 Haoru Tan , Chuang Wang , Xu-Yao Zhang , Cheng-Lin Liu

For graph classification tasks, many traditional kernel methods focus on measuring the similarity between graphs. These methods have achieved great success on resolving graph isomorphism problems. However, in some classification problems,…

Machine Learning · Computer Science 2021-02-18 Jianming Huang , Hiroyuki Kasai

Recently, many graph matching methods that incorporate pairwise constraint and that can be formulated as a quadratic assignment problem (QAP) have been proposed. Although these methods demonstrate promising results for the graph matching…

Computer Vision and Pattern Recognition · Computer Science 2018-07-27 Fudong Wang , Nan Xue , Yipeng Zhang , Xiang Bai , Gui-Song Xia

Graph convolutional neural networks (GCNNs) have received much attention recently, owing to their capability in handling graph-structured data. Among the existing GCNNs, many methods can be viewed as instances of a neural message passing…

Machine Learning · Computer Science 2021-03-19 Tien Huu Do , Duc Minh Nguyen , Giannis Bekoulis , Adrian Munteanu , Nikos Deligiannis

Node classification is an essential problem in graph learning. However, many models typically obtain unsatisfactory performance when applied to few-shot scenarios. Some studies have attempted to combine meta-learning with graph neural…

Machine Learning · Computer Science 2024-07-23 Yonghao Liu , Mengyu Li , Ximing Li , Lan Huang , Fausto Giunchiglia , Yanchun Liang , Xiaoyue Feng , Renchu Guan

This paper presents a technique for symmetry reduction that adaptively assigns a prefix of variables in a system of constraints so that the generated prefix-assignments are pairwise nonisomorphic under the action of the symmetry group of…

Logic in Computer Science · Computer Science 2018-09-11 Tommi Junttila , Matti Karppa , Petteri Kaski , Jukka Kohonen

This paper addresses the problem of selecting an optimal sampling set for signals on graphs. The proposed sampling set selection (SSS) is based on a localization operator that can consider both vertex domain and spectral domain…

Signal Processing · Electrical Eng. & Systems 2020-03-11 Akie Sakiyama , Yuichi Tanaka , Toshihisa Tanaka , Antonio Ortega

Graph classification, which aims to identify the category labels of graphs, plays a significant role in drug classification, toxicity detection, protein analysis etc. However, the limitation of scale in the benchmark datasets makes it easy…

Machine Learning · Computer Science 2021-04-06 Jiajun Zhou , Jie Shen , Shanqing Yu , Guanrong Chen , Qi Xuan

Evolution in its course found a variety of solutions to the same optimisation problem. The advent of high-throughput genomic sequencing has made available extensive data from which, in principle, one can infer the underlying structure on…

Quantitative Methods · Quantitative Biology 2016-04-12 Silvia Grigolon , Silvio Franz , Matteo Marsili

Bio-oil molecule assessment is essential for the sustainable development of chemicals and transportation fuels. These oxygenated molecules have adequate carbon, hydrogen, and oxygen atoms that can be used for developing new value-added…

Chemical Physics · Physics 2020-01-10 Romit Maulik , Rajeev Surendran Array , Prasanna Balaprakash

Existing multiplex graph models often assume homophily, where connected nodes tend to belong to the same class or share similar attributes. Consequently, these models may struggle with graphs exhibiting heterophily, where connected nodes…

Machine Learning · Computer Science 2026-05-14 Kamel Abdous , Nairouz Mrabah , Mohamed Bouguessa

Generalized from image and language translation, graph translation aims to generate a graph in the target domain by conditioning an input graph in the source domain. This promising topic has attracted fast-increasing attention recently.…

Graph representations offer powerful and intuitive ways to describe data in a multitude of application domains. Here, we consider stochastic processes generating graphs and propose a methodology for detecting changes in stationarity of such…

Machine Learning · Computer Science 2021-02-11 Daniele Zambon , Cesare Alippi , Lorenzo Livi