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Deep learning algorithms have accounted for the rapid acceleration of research in artificial intelligence in medical image analysis, interpretation, and segmentation with many potential applications across various sub disciplines in…
Automatic tumor segmentation is a crucial step in medical image analysis for computer-aided diagnosis. Although the existing methods based on convolutional neural networks (CNNs) have achieved the state-of-the-art performance, many…
Magnetic resonance imaging (MRI) has been proposed as a complimentary method to measure bone quality and assess fracture risk. However, manual segmentation of MR images of bone is time-consuming, limiting the use of MRI measurements in the…
One of the most common tasks in medical imaging is semantic segmentation. Achieving this segmentation automatically has been an active area of research, but the task has been proven very challenging due to the large variation of anatomy…
Separating and labeling each instance of a nucleus (instance-aware segmentation) is the key challenge in segmenting single cell nuclei on fluorescence microscopy images. Deep Neural Networks can learn the implicit transformation of a…
Accurate image segmentation is crucial in reservoir modelling and material characterization, enhancing oil and gas extraction efficiency through detailed reservoir models. This precision offers insights into rock properties, advancing…
Automated detection of curvilinear structures, e.g., blood vessels or nerve fibres, from medical and biomedical images is a crucial early step in automatic image interpretation associated to the management of many diseases. Precise…
Segmentation of 3D micro-Computed Tomographic uCT) images of rock samples is essential for further Digital Rock Physics (DRP) analysis, however, conventional methods such as thresholding, watershed segmentation, and converging active…
Magnetic Resonance Images (MRIs) are extremely used in the medical field to detect and better understand diseases. In order to fasten automatic processing of scans and enhance medical research, this project focuses on automatically…
Semantic segmentation is a well-addressed topic in the computer vision literature, but the design of fast and accurate video processing networks remains challenging. In addition, to run on embedded hardware, computer vision models often…
Early detection and segmentation of skin lesions is crucial for timely diagnosis and treatment, necessary to improve the survival rate of patients. However, manual delineation is time consuming and subject to intra- and inter-observer…
Direct automatic segmentation of objects from 3D medical imaging, such as magnetic resonance (MR) imaging, is challenging as it often involves accurately identifying a number of individual objects with complex geometries within a large…
Calcium imaging is a technique for observing neuron activity as a series of images showing indicator fluorescence over time. Manually segmenting neurons is time-consuming, leading to research on automated calcium imaging segmentation…
In this paper we introduce a novel method for segmentation that can benefit from general semantics of Convolutional Neural Network (CNN). Our segmentation proposes visually and semantically coherent image segments. We use binary encoding of…
One of the most crucial tasks in seismic reflection imaging is to identify the salt bodies with high precision. Traditionally, this is accomplished by visually picking the salt/sediment boundaries, which requires a great amount of manual…
Recent advancements in computer vision have significantly improved image analysis tasks. Yet, deep learning models often struggle when applied to domains outside their training distribution, such as in geosciences, where domain-specific…
Automated surface segmentation is important and challenging in many medical image analysis applications. Recent deep learning based methods have been developed for various object segmentation tasks. Most of them are a classification based…
Delimiting salt inclusions from migrated images is a time-consuming activity that relies on highly human-curated analysis and is subject to interpretation errors or limitations of the methods available. We propose to use migrated images…
Automated segmentation of individual calf muscle compartments from 3D magnetic resonance (MR) images is essential for developing quantitative biomarkers for muscular disease progression and its prediction. Achieving clinically acceptable…
In digital rock physics, analysing microstructures from CT and SEM scans is crucial for estimating properties like porosity and pore connectivity. Traditional segmentation methods like thresholding and CNNs often fall short in accurately…