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In this paper, we present a collection of novel and scalable algorithms designed to tackle the challenges inherent in the $k$-clique densest subgraph problem (\kcdsp) within network analysis. We propose \psctl, a novel algorithm based on…

Data Structures and Algorithms · Computer Science 2024-03-12 Xiaowei Ye , Miao Qiao , Rong-Hua Li , Qi Zhang , Guoren Wang

A clique in a graph is a set of vertices, each of which is adjacent to every other vertex in this set. A k-clique relaxes this requirement, requiring vertices to be within a distance k of each other, rather than directly adjacent. In…

Data Structures and Algorithms · Computer Science 2014-08-28 Ciaran McCreesh , Patrick Prosser

Listing dense subgraphs in large graphs plays a key task in varieties of network analysis applications like community detection. Clique, as the densest model, has been widely investigated. However, in practice, communities rarely form as…

Data Structures and Algorithms · Computer Science 2022-02-22 Zhengren Wang , Yi Zhou , Mingyu Xiao , Bakhadyr Khoussainov

We propose a multi-stage learning approach for pruning the search space of maximum clique enumeration, a fundamental computationally difficult problem arising in various network analysis tasks. In each stage, our approach learns the…

Machine Learning · Computer Science 2019-10-02 Marco Grassia , Juho Lauri , Sourav Dutta , Deepak Ajwani

Mining groups of genes that consistently co-express is an important problem in biomedical research, where it is critical for applications such as drug-repositioning and designing new disease treatments. Recently, Cooley et al. modeled this…

Data Structures and Algorithms · Computer Science 2022-06-17 Shweta Jain , Yosuke Mizutani , Blair Sullivan

Maximal clique enumeration (MCE) is a fundamental problem in graph theory and is used in many applications, such as social network analysis, bioinformatics, intelligent agent systems, cyber security, etc. Most existing MCE algorithms focus…

Databases · Computer Science 2020-12-01 Xiaofan Li , Rui Zhou , Lu Chen , Chengfei Liu , Qiang He , Yun Yang

This paper proposes a new general technique for maximal subgraph enumeration which we call proximity search, whose aim is to design efficient enumeration algorithms for problems that could not be solved by existing frameworks. To support…

Data Structures and Algorithms · Computer Science 2021-08-19 Alessio Conte , Andrea Marino , Roberto Grossi , Takeaki Uno , Luca Versari

The Automatic Quasi-clique Merger algorithm is a new algorithm adapted from early work published under the name QCM (quasi-clique merger) [Ou2006, Ou2007, Zhao2011, Qi2014]. The AQCM algorithm performs hierarchical clustering in any data…

Machine Learning · Computer Science 2021-03-09 Scott Payne , Edgar Fuller , George Spirou , Cun-Quan Zhang

The maximum clique problem (MCP) is to find the largest complete subgraph in an undirected graph, that is, the subgraph in which there are edges between every two different vertices. It is an NP-Hard problem with wide applications,…

Quantum Physics · Physics 2025-09-03 Wenmin Han , Shiqi Zheng , Peian Chen , Yukun Wang

Combinatorial optimization problems arise in a wide range of applications from diverse domains. Many of these problems are NP-hard and designing efficient heuristics for them requires considerable time and experimentation. On the other…

Data Structures and Algorithms · Computer Science 2020-01-07 Juho Lauri , Sourav Dutta , Marco Grassia , Deepak Ajwani

Spectral partitioning is a simple, nearly-linear time, algorithm to find sparse cuts, and the Cheeger inequalities provide a worst-case guarantee for the quality of the approximation found by the algorithm. Local graph partitioning…

Data Structures and Algorithms · Computer Science 2012-11-07 Shayan Oveis Gharan , Luca Trevisan

We present a quasi linear-time algorithm for Maximum Matching on distance-hereditary graphs and some of their generalizations. This improves on [Dragan, WG'97], who proposed such an algorithm for the subclass of (tent,hexahedron)-free…

Data Structures and Algorithms · Computer Science 2018-04-26 Guillaume Ducoffe , Alexandru Popa

This manuscript develops a new framework to analyze and design iterative optimization algorithms built on the notion of Integral Quadratic Constraints (IQC) from robust control theory. IQCs provide sufficient conditions for the stability of…

Optimization and Control · Mathematics 2021-05-27 Laurent Lessard , Benjamin Recht , Andrew Packard

Quantum adiabatic evolution provides a general technique for the solution of combinatorial search problems on quantum computers. We present the results of a numerical study of a particular application of quantum adiabatic evolution, the…

Quantum Physics · Physics 2018-12-20 Andrew M. Childs , Edward Farhi , Jeffrey Goldstone , Sam Gutmann

Dense subgraph extraction is a fundamental problem in graph analysis and data mining, aimed at identifying cohesive and densely connected substructures within a given graph. It plays a crucial role in various domains, including social…

Data Structures and Algorithms · Computer Science 2024-03-01 Chia-Yang Hung , Chih-Ya Shen

A $k$-defective clique is a relaxation of the traditional clique definition, allowing up to $k$ missing edges. This relaxation is crucial in various real-world applications such as link prediction, community detection, and social network…

Data Structures and Algorithms · Computer Science 2025-12-12 Jihoon Jang , Yehyun Nam , Kunsoo Park , Hyunjoon Kim

The problem of finding the densest subgraph in a given graph has several applications in graph mining, particularly in areas like social network analysis, protein and gene analyses etc. Depending on the application, finding dense subgraphs…

Data Structures and Algorithms · Computer Science 2019-11-07 Naga V. C. Gudapati , Enrico Malaguti , Michele Monaci

Approximate Nearest Neighbor Search with arbitrary filtering predicates (AFANNS) is essential for modern data applications, yet existing methods often incur substantial storage and computational costs. In this work, we introduce the Maximal…

Databases · Computer Science 2026-04-27 Xiaowei Ye , Rong-Hua Li , Guoren Wang , Kaiwen Xue , Daiyin Wang , Xubin Li

We consider a variant of the clustering problem for a complete weighted graph. The aim is to partition the nodes into clusters maximizing the sum of the edge weights within the clusters. This problem is known as the clique partitioning…

Social and Information Networks · Computer Science 2023-09-15 Alexander Belyi , Stanislav Sobolevsky , Alexander Kurbatski , Carlo Ratti

The graph isomorphism problem asks whether two graphs are identical up to vertex relabeling. While the exact problem admits quasi-polynomial-time classical algorithms, many applications in molecular comparison, noisy network analysis, and…

Quantum Physics · Physics 2026-03-31 Prateek P. Kulkarni