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We introduce a categorical language in which it is possible to talk about DNA sequencing, alignment methods, CRISPR, homologous recombination, haplotypes, and genetic linkage. This language takes the form of a class of limit-sketches whose…

Category Theory · Mathematics 2018-05-21 Rémy Tuyéras

A grammar logic refers to an extension to the multi-modal logic K in which the modal axioms are generated from a formal grammar. We consider a proof theory, in nested sequent calculus, of grammar logics with converse, i.e., every modal…

Logic in Computer Science · Computer Science 2012-04-12 Alwen Tiu , Egor Ianovski , Rajeev Gore

We provide a foundation for working with homological and homotopical methods in categorical algebra. This involves two mutually complementary components, namely (a) the strategic selection of suitable axiomatic frameworks, some well known…

Category Theory · Mathematics 2024-06-24 George Peschke , Tim Van der Linden

Linear conjunctive grammars are a family of formal grammars with an explicit conjunction operation allowed in the rules, which is notable for its computational equivalence fo one-way real-time cellular automata, also known as trellis…

Formal Languages and Automata Theory · Computer Science 2021-12-16 Ilya Olkhovsky , Alexander Okhotin

We provide a complete classification of all the possible categoricity spectra, in terms of internal size, that can appear in a large accessible category with directed colimits, assuming the Singular Cardinal Hypothesis ($SCH$), and…

Logic · Mathematics 2023-01-31 Christian Espindola

We show how categorial deduction can be implemented in higher-order (linear) logic programming, thereby realising parsing as deduction for the associative and non-associative Lambek calculi. This provides a method of solution to the parsing…

cmp-lg · Computer Science 2016-08-31 Glyn Morrill

Many theories of semantic interpretation use lambda-term manipulation to compositionally compute the meaning of a sentence. These theories are usually implemented in a language such as Prolog that can simulate lambda-term operations with…

cmp-lg · Computer Science 2008-02-03 Seth Kulick

Word class flexibility refers to the phenomenon whereby a single word form is used across different grammatical categories. Extensive work in linguistic typology has sought to characterize word class flexibility across languages, but…

Computation and Language · Computer Science 2020-09-22 Bai Li , Guillaume Thomas , Yang Xu , Frank Rudzicz

In lexical semantics, full-sentence segmentation and segment labeling of various phenomena are generally treated separately, despite their interdependence. We hypothesize that a unified lexical semantic recognition task is an effective way…

Computation and Language · Computer Science 2021-06-09 Nelson F. Liu , Daniel Hershcovich , Michael Kranzlein , Nathan Schneider

We introduce bounded category forcing axioms for well-behaved classes $\Gamma$. These are strong forms of bounded forcing axioms which completely decide the theory of some initial segment of the universe $H_{\lambda_\Gamma^+}$ modulo…

Logic · Mathematics 2021-01-11 David Aspero , Matteo Viale

We generalize the notion of an exact category and introduce weakly exact categories. A proof of the snake lemma in this general setting is given. Some applications are given to illustrate how one can do homological algebra in a weakly exact…

Category Theory · Mathematics 2009-01-19 Amir Jafari

The framework of causal models provides a principled approach to causal reasoning, applied today across many scientific domains. Here we present this framework in the language of string diagrams, interpreted formally using category theory.…

Logic in Computer Science · Computer Science 2023-04-18 Robin Lorenz , Sean Tull

Indexed languages are a classical notion in formal language theory, which has attracted attention in recent decades due to its role in higher-order model checking: They are precisely the languages accepted by order-2 pushdown automata. The…

Formal Languages and Automata Theory · Computer Science 2026-05-28 Richard Mandel , Corto Mascle , Georg Zetzsche

In category theory, the use of string diagrams is well known to aid in the intuitive understanding of certain concepts, particularly when dealing with adjunctions and monoidal categories. We show that string diagrams are also useful in…

Category Theory · Mathematics 2024-07-19 Kenji Nakahira

We define a coherent adjunction in a strict $3$-category and we use string diagrams to show that any adjunction can be extended to a coherent adjunction in an essentially unique way.

Category Theory · Mathematics 2024-08-07 Manuel Araújo

Cartesian difference categories are a recent generalisation of Cartesian differential categories which introduce a notion of "infinitesimal" arrows satisfying an analogue of the Kock-Lawvere axiom, with the axioms of a Cartesian…

Logic in Computer Science · Computer Science 2020-12-01 Mario Alvarez-Picallo , C. -H. Luke Ong

The correspondence between monoidal categories and graphical languages of diagrams has been studied extensively, leading to applications in quantum computing and communication, systems theory, circuit design and more. From the categorical…

Programming Languages · Computer Science 2018-03-05 Dan R Ghica , Aliaume Lopez

Category theory in homotopy type theory is intricate as categorical laws can only be stated "up to homotopy", and thus require coherences. The established notion of a univalent category (Ahrens, Kapulkin, Shulman) solves this by considering…

Category Theory · Mathematics 2017-10-31 Paolo Capriotti , Nicolai Kraus

Dictionary learning methods can be split into: i) class specific dictionary learning ii) class shared dictionary learning. The difference between the two categories is how to use discriminative information. With the first category, samples…

Computer Vision and Pattern Recognition · Computer Science 2020-10-26 Yan-Jiang Wang , Shuai Shao , Rui Xu , Werifeng Liu , Bao-Di Liu

We introduce categorical modularity, a novel low-resource intrinsic metric to evaluate word embedding quality. Categorical modularity is a graph modularity metric based on the $k$-nearest neighbor graph constructed with embedding vectors of…

Computation and Language · Computer Science 2021-06-03 Sílvia Casacuberta , Karina Halevy , Damián E. Blasi