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Sparse autoencoders (SAEs) are one of the main methods to interpret the inner workings of deep neural networks (DNNs), decomposing activations into higher-dimensional features. However, they exhibit critical shortcomings where a large…

Machine Learning · Computer Science 2026-05-19 Michał Brzozowski , Neo Christopher Chung

Protein language models have revolutionized structure prediction, but their nonlinear nature obscures how sequence representations inform structure prediction. While sparse autoencoders (SAEs) offer a path to interpretability here by…

Biomolecules · Quantitative Biology 2025-03-13 Nithin Parsan , David J. Yang , John J. Yang

Continuing advances in neural interfaces have enabled simultaneous monitoring of spiking activity from hundreds to thousands of neurons. To interpret these large-scale data, several methods have been proposed to infer latent dynamic…

Machine Learning · Computer Science 2019-08-23 Mohammad Reza Keshtkaran , Chethan Pandarinath

Sparse autoencoders (SAEs) are widely used to extract interpretable features from neural network representations, often under the implicit assumption that concepts correspond to independent linear directions. However, a growing body of…

Sparse autoencoders (SAEs) have emerged as a promising approach in language model interpretability, offering unsupervised extraction of sparse features. For interpretability methods to succeed, they must identify abstract features across…

Machine Learning · Computer Science 2025-09-08 Lovis Heindrich , Philip Torr , Fazl Barez , Veronika Thost

Sparse autoencoders (SAEs) are used to decompose neural network activations into sparsely activating features, but many SAE features are only interpretable at high activation strengths. To address this issue we propose to use binary sparse…

Machine Learning · Computer Science 2025-10-01 Lucia Quirke , Stepan Shabalin , Nora Belrose

Model internals encode rich information about how a large language model (LLM) processes its training data; however, post-training data engineering largely relies on external signals and ignores rich intrinsic signals lying in model…

Machine Learning · Computer Science 2026-05-27 Yi Jing , Zao Dai , Jinwu Hu , Zijun Yao , Lei Hou , Juanzi Li , Xiaozhi Wang

The cosine similarity between a large language model's hidden activations before and after Supervised Fine-Tuning (SFT) remains very high. This, at first glance, suggests that SFT leaves the model's activation geometry largely undisturbed.…

Artificial Intelligence · Computer Science 2026-05-13 Ruhaan Chopra

Although sparse autoencoders (SAEs) are crucial for identifying interpretable features in neural networks, it is still challenging to distinguish between real computational patterns and erroneous correlations. We introduce Model-X knockoffs…

Machine Learning · Computer Science 2025-11-18 Tsogt-Ochir Enkhbayar

Large Reasoning Models (LRMs) exhibit human-like cognitive reasoning strategies (e.g. backtracking, cross-verification) during reasoning process, which improves their performance on complex tasks. Currently, reasoning strategies are…

Artificial Intelligence · Computer Science 2026-01-08 Yi Fang , Wenjie Wang , Mingfeng Xue , Boyi Deng , Fengli Xu , Dayiheng Liu , Fuli Feng

Large Language Models (LLMs) have transformed natural language processing, yet their internal mechanisms remain largely opaque. Recently, mechanistic interpretability has attracted significant attention from the research community as a…

Machine Learning · Computer Science 2025-09-24 Dong Shu , Xuansheng Wu , Haiyan Zhao , Daking Rai , Ziyu Yao , Ninghao Liu , Mengnan Du

Extensive research has produced robust methods for unsupervised data visualization. Yet supervised visualization$\unicode{x2013}$where expert labels guide representations$\unicode{x2013}$remains underexplored, as most supervised approaches…

Machine Learning · Computer Science 2025-05-20 Adrien Aumon , Shuang Ni , Myriam Lizotte , Guy Wolf , Kevin R. Moon , Jake S. Rhodes

Sparse Autoencoders (SAEs) have recently gained attention as a means to improve the interpretability and steerability of Large Language Models (LLMs), both of which are essential for AI safety. In this work, we extend the application of…

Computer Vision and Pattern Recognition · Computer Science 2025-12-01 Mateusz Pach , Shyamgopal Karthik , Quentin Bouniot , Serge Belongie , Zeynep Akata

Sparse autoencoders (SAEs) have become a standard tool for mechanistic interpretability in autoregressive large language models (LLMs), enabling researchers to extract sparse, human-interpretable features and intervene on model behavior.…

Machine Learning · Computer Science 2026-02-06 Xu Wang , Bingqing Jiang , Yu Wan , Baosong Yang , Lingpeng Kong , Difan Zou

Deep learning, particularly with the advancement of Large Language Models, has transformed biomolecular modeling, with protein language models such as ESM inspiring emerging RNA language models such as RiNALMo. Recent work has begun…

Biomolecules · Quantitative Biology 2026-05-18 Taehan Kim , Sangdae Nam

Sparse Autoencoders (SAEs) have recently emerged as powerful tools for interpreting and steering the internal representations of large language models (LLMs). However, conventional approaches to analyzing SAEs typically rely solely on…

Machine Learning · Computer Science 2025-09-24 Dong Shu , Xuansheng Wu , Haiyan Zhao , Mengnan Du , Ninghao Liu

A new line of research for feature selection based on neural networks has recently emerged. Despite its superiority to classical methods, it requires many training iterations to converge and detect informative features. The computational…

Machine Learning · Computer Science 2022-11-29 Ghada Sokar , Zahra Atashgahi , Mykola Pechenizkiy , Decebal Constantin Mocanu

Motivated by the hypothesis that neural network representations encode abstract, interpretable features as linearly accessible, approximately orthogonal directions, sparse autoencoders (SAEs) have become a popular tool in interpretability.…

Machine Learning · Computer Science 2025-11-05 Valérie Costa , Thomas Fel , Ekdeep Singh Lubana , Bahareh Tolooshams , Demba Ba

Sparse autoencoders (SAEs) have proven useful in disentangling the opaque activations of neural networks, primarily large language models, into sets of interpretable features. However, adapting them to domains beyond language, such as…

Machine Learning · Computer Science 2025-11-13 Ege Erdogan , Ana Lucic

This paper investigates the enhancement of financial time series forecasting with the use of neural networks through supervised autoencoders, aiming to improve investment strategy performance. It specifically examines the impact of noise…

Trading and Market Microstructure · Quantitative Finance 2024-06-19 Bartosz Bieganowski , Robert Slepaczuk