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Electron ptychography enables dose-efficient atomic-resolution imaging, but conventional reconstruction algorithms suffer from noise sensitivity, slow convergence, and extensive manual hyperparameter tuning for regularization, especially in…

Image and Video Processing · Electrical Eng. & Systems 2025-11-12 Arthur R. C. McCray , Stephanie M. Ribet , Georgios Varnavides , Colin Ophus

We present an autoregressive pedestrian detection framework with cascaded phases designed to progressively improve precision. The proposed framework utilizes a novel lightweight stackable decoder-encoder module which uses convolutional…

Computer Vision and Pattern Recognition · Computer Science 2018-12-04 Garrick Brazil , Xiaoming Liu

Measurements achieved with ptychographic imaging are a special case of diffraction measurements. They are generated by illuminating small parts of a sample with, e.g., a focused X-ray beam. By shifting the sample, a set of far-field…

We introduce a fast solver for the phase field crystal (PFC) and functionalized Cahn-Hilliard (FCH) equations with periodic boundary conditions on a rectangular domain that features the preconditioned Nesterov accelerated gradient descent…

Numerical Analysis · Mathematics 2023-03-22 Jea-Hyun Park , Abner Salgado , Steven Wise

The extended Ptychographical Iterative Engine (ePIE) is a widely used phase retrieval algorithm for Electron Ptychography from 4-dimensional (4-D) Scanning Transmission Electron Microscopy (4-D STEM) measurements acquired with a focused or…

Ptychography, as a powerful lensless imaging method, has become a popular member of the coherent diffractive imaging family over decades of development. The ability to utilize low-dose X-rays and/or fast scans offers a big advantage in a…

Medical Physics · Physics 2024-06-14 Longlong Wu , Shinjae Yoo , Yong S. Chu , Xiaojing Huang , Ian K. Robinson

Geometry estimation from perspective images has greatly advanced, maturing to the point where off-the-shelf foundation models are able to reconstruct 3D scene structure not only from multi-view imagery, but even from a single view. A…

Computer Vision and Pattern Recognition · Computer Science 2026-05-28 Vukasin Bozic , Isidora Slavkovic , Dominik Narnhofer , Nando Metzger , Denis Rozumny , Konrad Schindler , Nikolai Kalischek

Pretrained latent diffusion models have shown strong potential for lossy image compression, owing to their powerful generative priors. Most existing diffusion-based methods reconstruct images by iteratively denoising from random noise,…

Image and Video Processing · Electrical Eng. & Systems 2025-10-21 Jinpei Guo , Yifei Ji , Zheng Chen , Kai Liu , Min Liu , Wang Rao , Wenbo Li , Yong Guo , Yulun Zhang

In Fourier ptychography, multiple low resolution images are captured and subsequently combined computationally into a high-resolution, large-field of view micrograph. A theoretical image-formation model based on the assumption of plane-wave…

Optics · Physics 2022-06-22 Tomas Aidukas , Lars Loetgering , Andrew Robert Harvey

In the scanning transmission electron microscope, both phase imaging of beam-sensitive materials and characterisation of a material's functional properties using in-situ experiments are becoming more widely available. As the practicable…

Materials Science · Physics 2024-09-20 Julie Marie Bekkevold , Jonathan J. P. Peters , Ryo Ishikawa , Naoya Shibata , Lewys Jones

We study algorithms for solving quadratic systems of equations based on optimization methods over polytopes. Our work is inspired by a recently proposed convex formulation of the phase retrieval problem, which estimates the unknown signal…

Information Theory · Computer Science 2018-05-25 Oussama Dhifallah , Christos Thrampoulidis , Yue M. Lu

Iterative projection algorithms for phase retrieval are tested on two simple toy models. The result provides useful insights in the behavior of these algorithms.

Optics · Physics 2007-05-23 S. Marchesini

The advent of advanced crystallographic techniques has shifted structural biology from static, single-conformer models toward probing protein dynamics. Extracting cooperative motions from temporally and spatially averaged electron density…

Quantitative Methods · Quantitative Biology 2025-09-08 Avinash Mandaiya , Veit Elser

Three-dimensional electron tomography is used to understand the structure and properties of samples in chemistry, materials science, geoscience, and biology. With the recent development of high-resolution detectors and algorithms that can…

Computational Physics · Physics 2021-10-18 David Ren , Michael Whittaker , Colin Ophus , Laura Waller

PolyChord is a novel nested sampling algorithm tailored for high dimensional parameter spaces. In addition, it can fully exploit a hierarchy of parameter speeds such as is found in CosmoMC and CAMB. It utilises slice sampling at each…

Cosmology and Nongalactic Astrophysics · Physics 2015-06-23 W. J. Handley , M. P. Hobson , A. N. Lasenby

The increased computational and experimental interest in perovskite systems comprising novel phases and reduced dimensionality has greatly expanded the search space for this class of materials. In similar fields, unified frameworks exist…

Materials Science · Physics 2023-08-31 Robert Stanton , Dhara J. Trivedi

GAN inversion aims to invert an input image into the latent space of a pre-trained GAN. Despite the recent advances in GAN inversion, there remain challenges to mitigate the tradeoff between distortion and editability, i.e. reconstructing…

Computer Vision and Pattern Recognition · Computer Science 2022-07-20 Xudong Mao , Liujuan Cao , Aurele T. Gnanha , Zhenguo Yang , Qing Li , Rongrong Ji

Recovering the transmission matrix of a disordered medium is a challenging problem in disordered photonics. Usually, its reconstruction relies on a complex inversion that aims at connecting a fully-controlled input to the deterministic…

PHAST is a software package written in standard Fortran, with MPI and CUDA extensions, able to efficiently perform parallel multicanonical Monte Carlo simulations of single or multiple heteropolymeric chains, as coarse-grained models for…

Computational Physics · Physics 2017-02-08 Rafael B. Frigori

Regional hydrology studies are often supported by high resolution simulations of subsurface flow that require expensive and extensive computations. Efficient usage of the latest high performance parallel computing systems becomes a…

Mathematical Software · Computer Science 2017-10-04 Carsten Burstedde , Jose A. Fonseca , Stefan Kollet