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Interventions on model-internal states are fundamental operations in many areas of AI, including model editing, steering, robustness, and interpretability. To facilitate such research, we introduce $\textbf{pyvene}$, an open-source Python…

We introduce a new library named abess that implements a unified framework of best-subset selection for solving diverse machine learning problems, e.g., linear regression, classification, and principal component analysis. Particularly, the…

Machine Learning · Statistics 2024-04-02 Jin Zhu , Xueqin Wang , Liyuan Hu , Junhao Huang , Kangkang Jiang , Yanhang Zhang , Shiyun Lin , Junxian Zhu

Molecular dynamics (MD) simulations play a crucial role in resolving the underlying conformational dynamics of molecular systems. However, their capability to correctly reproduce and predict dynamics in agreement with experiments is limited…

Chemical Physics · Physics 2025-05-19 Ivan Gilardoni , Valerio Piomponi , Thorben Fröhlking , Giovanni Bussi

Bayesian Networks (BNs) are used in various fields for modeling, prediction, and decision making. pgmpy is a python package that provides a collection of algorithms and tools to work with BNs and related models. It implements algorithms for…

Machine Learning · Computer Science 2023-04-19 Ankur Ankan , Johannes Textor

Modern Python projects execute computational functions using native libraries and give Python interfaces to boost execution speed; hence, testing these libraries becomes critical to the project's robustness. One challenge is that existing…

Software Engineering · Computer Science 2022-06-29 Xin Zhang , Xutong Ma , Jiwen Yan , Baoquan Cui , Jun Yan , Jian Zhang

Python has emerged as one of the most popular programming languages, extensively utilized in domains such as machine learning, data analysis, and web applications. Python's dynamic nature and extensive usage make it an attractive candidate…

Software Engineering · Computer Science 2024-03-04 Islem Bouzenia , Bajaj Piyush Krishan , Michael Pradel

We introduce Prove-It, a Python-based general-purpose interactive theorem-proving assistant designed with the goal of making formal theorem proving as easy and natural as informal theorem proving (with moderate training). Prove-It uses a…

Logic in Computer Science · Computer Science 2020-12-29 Wayne M. Witzel , Warren D. Craft , Robert D. Carr , Joaquín E. Madrid Larrañaga

Conformance checking techniques allow us to evaluate how well some exhibited behaviour, represented by a trace of monitored events, conforms to a specified process model. Modern monitoring and activity recognition technologies, such as…

Artificial Intelligence · Computer Science 2023-03-31 Jiawei Zheng , Petros Papapanagiotou , Jacques D. Fleuriot

Robust estimation provides essential tools for analyzing data that contain outliers, ensuring that statistical models remain reliable even in the presence of some anomalous data. While robust methods have long been available in R, users of…

Computation · Statistics 2024-11-05 Sarah Leyder , Jakob Raymaekers , Peter J. Rousseeuw , Thomas Servotte , Tim Verdonck

Environment setup-the process of configuring the system to work with a specific software project-represents a persistent challenge in Software Engineering (SE). Automated environment setup methods could assist developers by providing fully…

Machine Learning · Computer Science 2025-10-16 Alexander Kovrigin , Aleksandra Eliseeva , Konstantin Grotov , Egor Bogomolov , Yaroslav Zharov

Policy specification for personal user data is a hard problem, as it depends on many factors that cannot be predetermined by system developers. Simultaneously, systems are increasingly relying on users to make security decisions. In this…

Cryptography and Security · Computer Science 2017-07-14 Adwait Nadkarni , William Enck , Somesh Jha , Jessica Staddon

Event reconstruction in the ILC community has typically relied on algorithms implemented in C++, a fast compiled language. However, the Python package pyLCIO provides a full interface to tracker and calorimeter hits stored in LCIO files,…

Instrumentation and Detectors · Physics 2020-02-17 C. T. Potter

This paper introduces a new Python package specifically designed to address calibration of probabilistic classifiers under dataset shift. The method is demonstrated in binary and multi-class settings and its effectiveness is measured…

Machine Learning · Computer Science 2025-09-16 Ivan Petej

Large language models possess impressive capabilities in generating programs (e.g., Python) from natural language descriptions to execute robotic tasks. However, these generated programs often contain errors that violate externally given…

Artificial Intelligence · Computer Science 2025-11-10 Yunhao Yang , Neel P. Bhatt , William Ward , Zichao Hu , Joydeep Biswas , Ufuk Topcu

The probing classifiers framework has been employed for interpreting deep neural network models for a variety of natural language processing (NLP) applications. Studies, however, have largely focused on sentencelevel NLP tasks. This work is…

Computation and Language · Computer Science 2023-10-25 Barry Wang , Xinya Du , Claire Cardie

Programming by Example (PBE) is the task of inducing computer programs from input-output examples. It can be seen as a type of machine learning where the hypothesis space is the set of legal programs in some programming language. Recent…

Programming Languages · Computer Science 2017-03-03 John K. Feser , Marc Brockschmidt , Alexander L. Gaunt , Daniel Tarlow

We introduce the task of entity-centric query refinement. Given an input query whose answer is a (potentially large) collection of entities, the task output is a small set of query refinements meant to assist the user in efficient domain…

Computation and Language · Computer Science 2022-09-19 David Wadden , Nikita Gupta , Kenton Lee , Kristina Toutanova

Programming-by-example (PBE) is a synthesis paradigm that allows users to generate functions by simply providing input-output examples. While a promising interaction paradigm, synthesis is still too slow for realtime interaction and more…

Machine Learning · Computer Science 2020-02-10 Kairo Morton , William Hallahan , Elven Shum , Ruzica Piskac , Mark Santolucito

Refinement types enrich a language's type system with logical predicates that circumscribe the set of values described by the type, thereby providing software developers a tunable knob with which to inform the type system about what…

Programming Languages · Computer Science 2020-10-16 Ranjit Jhala , Niki Vazou

We propose an automated method for proving termination of $\pi$-calculus processes, based on a reduction to termination of sequential programs: we translate a $\pi$-calculus process to a sequential program, so that the termination of the…

Programming Languages · Computer Science 2021-09-02 Tsubasa Shoshi , Takuma Ishikawa , Naoki Kobayashi , Ken Sakayori , Ryosuke Sato , Takeshi Tsukada