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This paper describes a novel Python package, named causalgraph, for modeling and saving causal graphs embedded in knowledge graphs. The package has been designed to provide an interface between causal disciplines such as causal discovery…

Artificial Intelligence · Computer Science 2023-01-23 Sven Pieper , Carl Willy Mehling , Dominik Hirsch , Tobias Lüke , Steffen Ihlenfeldt

PyGOD is an open-source Python library for detecting outliers in graph data. As the first comprehensive library of its kind, PyGOD supports a wide array of leading graph-based methods for outlier detection under an easy-to-use,…

Machine Learning · Computer Science 2024-06-04 Kay Liu , Yingtong Dou , Xueying Ding , Xiyang Hu , Ruitong Zhang , Hao Peng , Lichao Sun , Philip S. Yu

Local governments, as part of 'smart city' initiatives and to promote interoperability, are increasingly incorporating open-source software into their data management, analysis, and visualisation workflows. Python, with its concise and…

Computers and Society · Computer Science 2022-03-01 Gregor Herda , Robert McNabb

Pythonic code is idiomatic code that follows guiding principles and practices within the Python community. Offering performance and readability benefits, Pythonic code is claimed to be widely adopted by experienced Python developers, but…

The Python library FatGHol FatGHoL used in Murri2012 to reckon the rational homology of the moduli space of Riemann surfaces is an example of a non-numeric scientific code: most of the processing it does is generating graphs (represented by…

Mathematical Software · Computer Science 2014-04-30 Riccardo Murri

The "correct by construction" paradigm is an important component of modern Formal Methods, and here we use the probabilistic Guarded-Command Language $\mathit{pGCL}$ to illustrate its application to $\mathit{probabilistic}$ programming.…

Logic in Computer Science · Computer Science 2020-07-31 Annabelle McIver , Carroll Morgan

Command injection vulnerabilities are a significant security threat in dynamic languages like Python, particularly in widely used open-source projects where security issues can have extensive impact. With the proven effectiveness of Large…

Software Engineering · Computer Science 2025-05-22 Yuxuan Wang , Jingshu Chen , Qingyang Wang

The Python programming language is best known for its syntax and scientific libraries, but it is also notorious for its slow interpreter. Optimizing critical sections in Python entails special knowledge of the binary interactions between…

Programming Languages · Computer Science 2025-07-02 Isabella Basso do Amaral , Renato Cordeiro Ferreira , Alfredo Goldman

Simultaneously modeling source code and natural language has many exciting applications in automated software development and understanding. Pursuant to achieving such technology, we introduce PyMT5, the Python method text-to-text transfer…

Machine Learning · Computer Science 2020-10-08 Colin B. Clement , Dawn Drain , Jonathan Timcheck , Alexey Svyatkovskiy , Neel Sundaresan

BondGraphTools is a Python library for scripted modelling of complex multi-physics systems. In contrast to existing modelling solutions, BondGraphTools is based upon the well established bond graph methodology, provides a programming…

Systems and Control · Electrical Eng. & Systems 2019-06-27 Peter Cudmore , Peter J. Gawthrop , Michael Pan , Edmund J. Crampin

PymePix is a new Python 3 library that provides control and acquisition for the Timepix3-SPIDR hardware. The rich set of data-structures and intuitive routines reduces time and coding effort to quickly configure, acquire, and visualize data…

PyG (PyTorch Geometric) has evolved significantly since its initial release, establishing itself as a leading framework for Graph Neural Networks. In this paper, we present Pyg 2.0 (and its subsequent minor versions), a comprehensive update…

PyTorch \texttt{2.x} introduces a compiler designed to accelerate deep learning programs. However, for machine learning researchers, adapting to the PyTorch compiler to full potential can be challenging. The compiler operates at the Python…

Machine Learning · Computer Science 2024-03-22 Kaichao You , Runsheng Bai , Meng Cao , Jianmin Wang , Ion Stoica , Mingsheng Long

To facilitate flexible and efficient structural bioinformatics analyses, new functionality for three-dimensional structure processing and analysis has been introduced into PyCogent -- a popular feature-rich framework for sequence-based…

Biomolecules · Quantitative Biology 2018-10-01 Marcin Cieslik , Zygmunt Derewenda , Cameron Mura

When a new programming language appears, the syntax and intended behaviour of its programs need to be specified. The behaviour of each language construct can be concisely specified by translating it to fundamental constructs (funcons),…

Programming Languages · Computer Science 2023-08-22 Peter D. Mosses

This paper introduces pyRDF2Vec, a Python software package that reimplements the well-known RDF2Vec algorithm along with several of its extensions. By making the algorithm available in the most popular data science language, and by bundling…

Machine Learning · Computer Science 2022-05-06 Gilles Vandewiele , Bram Steenwinckel , Terencio Agozzino , Femke Ongenae

Calysto Scheme is written in Scheme in Continuation-Passing Style, and converted through a series of correctness-preserving program transformations into Python. It has support for standard Scheme functionality, including call/cc, as well as…

Programming Languages · Computer Science 2023-10-24 Douglas S. Blank , James B. Marshall

Python bindings are a critical bridge between high-performance C++ libraries and the flexibility of Python, enabling rapid prototyping, reproducible experiments, and integration with simulation and learning frameworks in robotics research.…

Robotics · Computer Science 2026-03-06 Weihang Guo , Theodoros Tyrovouzis , Lydia E. Kavraki

Computer simulations are used widely across the engineering and science disciplines, including in the research and development of magnetic devices using computational micromagnetics. In this work, we identify and review different approaches…

Computational Physics · Physics 2017-02-27 Marijan Beg , Ryan A. Pepper , Hans Fangohr

Many popular Python libraries use C-extensions for performance-critical operations allowing users to combine the best of the two worlds: The simplicity and versatility of Python and the performance of C. A drawback of this approach is that…

Software Engineering · Computer Science 2026-03-09 Lucas Berg , Lukas Krodinger , Stephan Lukasczyk , Annibale Panichella , Gordon Fraser , Wim Vanhoof , Xavier Devroey
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