English
Related papers

Related papers: Compendium Manager: a tool for coordination of wor…

200 papers

Despite recent progress in Language Models (LMs) for software engineering, collecting training data remains a significant pain point. Existing datasets are small, with at most 1,000s of training instances from 11 or fewer GitHub…

Existing ML benchmarks lack the depth and diversity of annotations needed for evaluating models on business process management (BPM) tasks. BPM is the practice of documenting, measuring, improving, and automating enterprise workflows.…

Benchmarking, which involves collecting reference datasets and demonstrating method performances, is a requirement for the development of new computational tools, but also becomes a domain of its own to achieve neutral comparisons of…

Other Quantitative Biology · Quantitative Biology 2025-07-24 Izaskun Mallona , Charlotte Soneson , Ben Carrillo , Almut Luetge , Daniel Incicau , Reto Gerber , Anthony Sonrel , Mark D. Robinson

We present a new Python pipeline for processing data from astronomical long-slit spectroscopy observations recorded with CCD detectors. The pipeline is designed to aim for simplicity, manual execution, transparency and robustness. The goal…

Instrumentation and Methods for Astrophysics · Physics 2025-04-02 Kostas Valeckas , Johan Peter Uldall Fynbo , Jens-Kristian Krogager , Kasper Elm Heintz

We introduce MOSAIC, a Python program for machine learning models. Our framework is developed with in mind accelerating machine learning studies through making implementing and testing arbitrary network architectures and data sets simpler,…

Machine Learning · Computer Science 2023-01-31 Mattéo Papin , Yann Beaujeault-Taudière , Frédéric Magniette

Data analysis for scientific experiments and enterprises, large-scale simulations, and machine learning tasks all entail the use of complex computational pipelines to reach quantitative and qualitative conclusions. If some of the activities…

Databases · Computer Science 2020-04-15 Raoni Lourenço , Juliana Freire , Dennis Shasha

Large language model (LLM) merging has become a key technique in modern LLM development pipelines, enabling the integration of multiple task- or domain-specific expert models without retraining. However, as the number of experts grows,…

Databases · Computer Science 2026-02-17 Yuanyi Wang , Yanggan Gu , Zihao Wang , Kunxi Li , Yifan Yang , Zhaoyi Yan , Congkai Xie , Jianmin Wu , Hongxia Yang

Existing Python libraries and tools lack the ability to efficiently compute statistical test results for large datasets in the presence of missing values. This presents an issue as soon as constraints on runtime and memory availability…

Mathematical Software · Computer Science 2025-05-02 Fabian Woller , Lis Arend , Christian Fuchsberger , Markus List , David B. Blumenthal

Context: Mining software repositories is a popular means to gain insights into a software project's evolution, monitor project health, support decisions and derive best practices. Tools supporting the mining process are commonly applied by…

Software Engineering · Computer Science 2025-11-13 Nicole Hoess , Carlos Paradis , Rick Kazman , Wolfgang Mauerer

We present QueryGym, a lightweight, extensible Python toolkit that supports large language model (LLM)-based query reformulation. This is an important tool development since recent work on llm-based query reformulation has shown notable…

Information Retrieval · Computer Science 2025-11-21 Amin Bigdeli , Radin Hamidi Rad , Mert Incesu , Negar Arabzadeh , Charles L. A. Clarke , Ebrahim Bagheri

Nowadays machine learning (ML) practitioners have access to numerous ML libraries available online. Such libraries can be used to create ML pipelines that consist of a series of steps where each step may invoke up to several ML libraries…

With open-source projects growing in size and complexity, manual compilation becomes tedious and error-prone, highlighting the need for automation to improve efficiency and accuracy. However, the complexity of compilation instruction search…

Software Engineering · Computer Science 2025-05-08 Li Hu , Guoqiang Chen , Xiuwei Shang , Shaoyin Cheng , Benlong Wu , Gangyang Li , Xu Zhu , Weiming Zhang , Nenghai Yu

In this paper, we present sequeval, a software tool capable of performing the offline evaluation of a recommender system designed to suggest a sequence of items. A sequence-based recommender is trained considering the sequences already…

Information Retrieval · Computer Science 2018-11-30 Diego Monti , Enrico Palumbo , Giuseppe Rizzo , Maurizio Morisio

Empirical research on code review processes is increasingly central to understanding software quality and collaboration. However, collecting and analyzing review data remains a time-consuming and technically intensive task. Most researchers…

Software Engineering · Computer Science 2025-10-07 Samah Kansab , Francis Bordeleau , Ali Tizghadam

The Common Workflow Language (CWL) is a widely adopted language for defining and sharing computational workflows. It is designed to be independent of the execution engine on which workflows are executed. In this paper, we describe our…

Distributed, Parallel, and Cluster Computing · Computer Science 2024-12-12 Nishchay Karle , Ben Clifford , Yadu Babuji , Ryan Chard , Daniel S. Katz , Kyle Chard

Background: Compilers tend to produce cryptic and uninformative error messages, leaving programmers confused and requiring them to spend precious time to resolve the underlying error. To find help, programmers often take to online…

Software Engineering · Computer Science 2019-06-28 Emillie Thiselton , Christoph Treude

Motivation: Complex computational pipelines are becoming a staple of modern scientific research. Often these pipelines are resource intensive and require days of computing time. In such cases, it makes sense to run them over distributed…

Software Engineering · Computer Science 2015-01-28 David K. Brown , Thommas M. Musyoka , David L. Penkler , Özlem Tastan Bishop

In analytical applications, database systems often need to sustain workloads with multiple concurrent scans hitting the same table. The Cooperative Scans (CScans) framework, which introduces an Active Buffer Manager (ABM) component into the…

Databases · Computer Science 2012-08-22 Michał Świtakowski , Peter Boncz , Marcin Żukowski

The Active Matter Evaluation Package (AMEP) is a Python library for analyzing simulation data of particle-based and continuum simulations. It provides a powerful and simple interface for handling large data sets and for calculating and…

The current landscape of scientific research is widely based on modeling and simulation, typically with complexity in the simulation's flow of execution and parameterization properties. Execution flows are not necessarily straightforward…

Distributed, Parallel, and Cluster Computing · Computer Science 2018-07-26 Eduardo Ponce , Brittany Stephenson , Suzanne Lenhart , Judy Day , Gregory D. Peterson