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The propagation of signalling molecules within cellular networks is affected by network topology, but also by the spatial arrangement of cells in the networks. Understanding the collective reaction--diffusion behaviour in space of signals…

Disordered Systems and Neural Networks · Physics 2025-01-09 Adel Mehrpooya , Vivien J. Challis , Pascal R. Buenzli

Diffusion processes in networks are increasingly used to model the spread of information and social influence. In several applications in computational sustainability such as the spread of wildlife, infectious diseases and traffic mobility…

Social and Information Networks · Computer Science 2013-09-27 Akshat Kumar , Daniel Sheldon , Biplav Srivastava

Boolean Networks and their dynamics are of great interest as abstract modeling schemes in various disciplines, ranging from biology to computer science. Whereas parallel update schemes have been studied extensively in past years, the level…

Statistical Mechanics · Physics 2007-07-19 Hamed Mahmoudi , Andrea Pagnani , Martin Weigt , Riccardo Zecchina

We consider spatially coupled systems governed by a set of scalar density evolution equations. Such equations track the behavior of message-passing algorithms used, for example, in coding, sparse sensing, or constraint-satisfaction…

Information Theory · Computer Science 2017-01-16 Rafah El-Khatib , Nicolas Macris

Elucidating the neurophysiological mechanisms underlying neural pattern formation remains an outstanding challenge in Computational Neuroscience. In this paper, we address the issue of understanding the emergence of neural patterns by…

Neurons and Cognition · Quantitative Biology 2024-06-04 Gregory Dumont , Carmen Oana Tarniceriu

Bayesian predictive coding is a putative neuromorphic method for acquiring higher-level neural representations to account for sensory input. Although originating in the neuroscience community, there are also efforts in the machine learning…

Computer Vision and Pattern Recognition · Computer Science 2020-09-24 Matin Hosseini , Anthony Maida

Predictive uncertainty estimation remains a challenging problem precluding the use of deep neural networks as subsystems within safety-critical applications. Aleatoric uncertainty is a component of predictive uncertainty that cannot be…

Machine Learning · Computer Science 2023-12-12 Angel Daruna , Yunye Gong , Abhinav Rajvanshi , Han-Pang Chiu , Yi Yao

An inhomogeneous anisotropic physical model of the brain cortex is presented that predicts the emergence of non--evanescent (weakly damped) wave--like modes propagating in the thin cortex layers transverse to both the mean neural fiber…

Biological Physics · Physics 2020-04-29 Vitaly L. Galinsky , Lawrence R. Frank

Biochemical signalling cascades transduce extracellular stimuli into cellular responses through sequences of discrete, node-to-node activations. While signal fidelity depends critically on local interaction kinetics, the mechanisms…

Dynamical Systems · Mathematics 2026-04-20 Chathranee Jayathilaka , Mark B. Flegg

Treating the ideal coherent state as a reference state, the effects due to departure from coherence of an initial wave packet propagating through a nonlinear medium, were examined, specifically in the context of non-classical effects such…

Quantum Physics · Physics 2007-07-09 C. Sudheesh

We consider the propagation of wave packets for a nonlinear Schr\"odinger equation, with a matrix-valued potential, in the semi-classical limit. For a matrix-valued potential, Strichartz estimates are available under long range assumptions.…

Analysis of PDEs · Mathematics 2012-03-21 Lysianne Hari

Neural networks posses the crucial ability to generate meaningful representations of task-dependent features. Indeed, with appropriate scaling, supervised learning in neural networks can result in strong, task-dependent feature learning.…

Machine Learning · Computer Science 2025-05-13 Alexander van Meegen , Haim Sompolinsky

Typically, contagion strength is modeled by a transmission rate $\lambda$, whereby all nodes in a network are treated uniformly in a mean-field approximation. However, local agents react differently to the same contagion based on their…

Physics and Society · Physics 2014-01-28 Pouya Manshour , Afshin Montakhab

We study several basic dispersive models with random periodic initial data such that the different Fourier modes are independent random variables. Motivated by the vast Physics literature on related topics, we then study how much the…

Analysis of PDEs · Mathematics 2013-04-26 Anne-Sophie de Suzzoni , Nikolay Tzvetkov

Classical percolation theory underlies many processes of information transfer along the links of a network. In these standard situations, the requirement for two nodes to be able to communicate is the presence of at least one uninterrupted…

Statistical Mechanics · Physics 2023-10-25 Lorenzo Cirigliano , Claudio Castellano , Gábor Timár

When the parameters are independently and identically distributed (initialized) neural networks exhibit undesirable properties that emerge as the number of layers increases, e.g. a vanishing dependency on the input and a concentration on…

Machine Learning · Statistics 2020-03-03 Stefano Peluchetti , Stefano Favaro

Predictive coding is a message-passing framework initially developed to model information processing in the brain, and now also topic of research in machine learning due to some interesting properties. One of such properties is the natural…

Machine Learning · Computer Science 2022-12-12 Billy Byiringiro , Tommaso Salvatori , Thomas Lukasiewicz

We extend Gaussian networks - directed acyclic graphs that encode probabilistic relationships between variables - to its vector form. Vector Gaussian continuous networks consist of composite nodes representing multivariates, that take…

Artificial Intelligence · Computer Science 2013-02-18 Satnam Alag , Alice M. Agogino

We study artificial neural networks with nonlinear waves as a computing reservoir. We discuss universality and the conditions to learn a dataset in terms of output channels and nonlinearity. A feed-forward three-layer model, with an…

Optics · Physics 2020-09-02 Giulia Marcucci , Davide Pierangeli , Claudio Conti

This study presents a neural network-enhanced approach to modeling disease spread dynamics over time and space. Neural networks are used to estimate time-varying parameters, with two calibration methods explored: Approximate Bayesian…

Quantitative Methods · Quantitative Biology 2024-10-29 Randy L. Caga-anan
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