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We propose a simple subsampling scheme for fast randomized approximate computation of optimal transport distances. This scheme operates on a random subset of the full data and can use any exact algorithm as a black-box back-end, including…

Computation · Statistics 2020-12-17 Max Sommerfeld , Jörn Schrieber , Yoav Zemel , Axel Munk

Machine Learning has attracted considerable attention throughout the past decade due to its potential to solve far-reaching tasks, such as image classification, object recognition, anomaly detection, and data forecasting. A standard…

Machine Learning · Computer Science 2022-02-09 Gustavo Henrique de Rosa , Mateus Roder , João Paulo Papa

Sequence classification algorithms, such as SVM, require a definition of distance (similarity) measure between two sequences. A commonly used notion of similarity is the number of matches between $k$-mers ($k$-length subsequences) in the…

Data Structures and Algorithms · Computer Science 2017-12-13 Muhammad Farhan , Juvaria Tariq , Arif Zaman , Mudassir Shabbir , Imdad Ullah Khan

The Johnson-Lindenstrauss transform allows one to embed a dataset of $n$ points in $\mathbb{R}^d$ into $\mathbb{R}^m,$ while preserving the pairwise distance between any pair of points up to a factor $(1 \pm \varepsilon)$, provided that $m…

Data Structures and Algorithms · Computer Science 2022-07-08 Ora Nova Fandina , Mikael Møller Høgsgaard , Kasper Green Larsen

Given a finitely-connected bounded planar domain $\Omega$, it is possible to define a {\it divergence distance} $D(x,y)$ from $x\in\Omega$ to $y\in\Omega$, which takes into account the complex geometry of the domain. This distance function…

Complex Variables · Mathematics 2018-01-23 Renjie Chen , Craig Gotsman , Kai Hormann

We give a dimensionality reduction procedure to approximate the sum of distances of a given set of $n$ points in $R^d$ to any "shape" that lies in a $k$-dimensional subspace. Here, by "shape" we mean any set of points in $R^d$. Our…

Data Structures and Algorithms · Computer Science 2021-06-25 Zhili Feng , Praneeth Kacham , David P. Woodruff

The problem of space-efficient depth-first search (DFS) is reconsidered. A particularly simple and fast algorithm is presented that, on a directed or undirected input graph $G=(V,E)$ with $n$ vertices and $m$ edges, carries out a DFS in…

Data Structures and Algorithms · Computer Science 2018-05-31 Torben Hagerup

With the use of ontologies in several domains such as semantic web, information retrieval, artificial intelligence, the concept of similarity measuring has become a very important domain of research. Therefore, in the current paper, we…

Databases · Computer Science 2017-09-27 Noreddine Gherabi , Abdelhadi Daoui , Abderrahim Marzouk

Consider the natural question of how to measure the similarity of curves in the plane by a quantity that is invariant under translations of the curves. Such a measure is justified whenever we aim to quantify the similarity of the curves'…

Computational Geometry · Computer Science 2020-08-18 Karl Bringmann , Marvin Künnemann , André Nusser

In this paper, we present approximate distance and shortest-path oracles for fault-tolerant Euclidean spanners motivated by the routing problem in real-world road networks. An $f$-fault-tolerant Euclidean $t$-spanner for a set $V$ of $n$…

Computational Geometry · Computer Science 2023-12-29 Kyungjin Cho , Jihun Shin , Eunjin Oh

This paper extends the problem of 2-dimensional palindrome search into the area of approximate matching. Using the Hamming distance as the measure, we search for 2D palindromes that allow up to $k$ mismatches. We consider two different…

Data Structures and Algorithms · Computer Science 2020-02-27 Dina Sokol

Given a finite metric space $(V,d)$, an approximate distance oracle is a data structure which, when queried on two points $u,v \in V$, returns an approximation to the the actual distance between $u$ and $v$ which is within some bounded…

Data Structures and Algorithms · Computer Science 2016-12-19 Michael Dinitz , Zeyu Zhang

We give new sublinear and parallel algorithms for the extensively studied problem of approximating n-variable r-CSPs (constraint satisfaction problems with constraints of arity r up to an additive error. The running time of our algorithms…

Data Structures and Algorithms · Computer Science 2014-07-31 Grigory Yaroslavtsev

The quartet distance is a measure of similarity used to compare two unrooted phylogenetic trees on the same set of $n$ leaves, defined as the number of subsets of four leaves related by a different topology in both trees. After a series of…

Data Structures and Algorithms · Computer Science 2020-12-03 Bartłomiej Dudek , Paweł Gawrychowski

The diameter of a graph is one if its most important parameters, being used in many real-word applications. In particular, the diameter dictates how fast information can spread throughout data and communication networks. Thus, it is a…

Data Structures and Algorithms · Computer Science 2019-02-21 Keerti Choudhary , Omer Gold

Dynamic Time Warping (DTW) is a widely used similarity measure for comparing strings that encode time series data, with applications to areas including bioinformatics, signature verification, and speech recognition. The standard…

Data Structures and Algorithms · Computer Science 2022-07-05 Zoe Xi , William Kuszmaul

The nested distance builds on the Wasserstein distance to quantify the difference of stochastic processes, including also the information modelled by filtrations. The Sinkhorn divergence is a relaxation of the Wasserstein distance, which…

Optimization and Control · Mathematics 2021-02-11 Alois Pichler , Michael Weinhardt

We propose the first \emph{local search} algorithm for Euclidean clustering that attains an $O(1)$-approximation in almost-linear time. Specifically, for Euclidean $k$-Means, our algorithm achieves an $O(c)$-approximation in $\tilde{O}(n^{1…

Data Structures and Algorithms · Computer Science 2025-04-07 Shaofeng H. -C. Jiang , Yaonan Jin , Jianing Lou , Pinyan Lu

We introduce fast-decodable indexing schemes for edit distance which can be used to speed up edit distance computations to near-linear time if one of the strings is indexed by an indexing string $I$. In particular, for every length $n$ and…

Data Structures and Algorithms · Computer Science 2019-04-11 Bernhard Haeupler , Aviad Rubinstein , Amirbehshad Shahrasbi

The biharmonic distance is a fundamental metric on graphs that measures the dissimilarity between two nodes, capturing both local and global structures. It has found applications across various fields, including network centrality, graph…

Social and Information Networks · Computer Science 2026-01-16 Dehong Zheng , Zhongzhi Zhang