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Programmable electron-beam scanning offers new opportunities to improve dose efficiency and suppress scan-induced artifacts in scanning transmission electron microscopy. Here, we systematically benchmark the impact of non-raster…

The use of digitally reconstructed radiographs (DRRs) to solve inverse problems such as slice-to-volume registration and 3D reconstruction is well-studied in preoperative settings. In intraoperative imaging, the utility of DRRs is limited…

Computer Vision and Pattern Recognition · Computer Science 2022-08-29 Vivek Gopalakrishnan , Polina Golland

Low Dynamic Range (LDR) to High Dynamic Range (HDR) image translation is a fundamental task in many computational vision problems. Numerous data-driven methods have been proposed to address this problem; however, they lack explicit modeling…

Graphics · Computer Science 2025-09-23 Hrishav Bakul Barua , Kalin Stefanov , Ganesh Krishnasamy , KokSheik Wong , Abhinav Dhall

We present PyMoosh, a Python-based simulation library designed to provide a comprehensive set of numerical tools allowing to compute essentially all optical characteristics of multilayered structures, ranging from reflectance and…

Blind ptychography is a phase retrieval method using multiple coded diffraction patterns from different, overlapping parts of the unknown extended object illuminated with an unknown window function. The window function is also known as the…

Image and Video Processing · Electrical Eng. & Systems 2018-12-04 Albert Fannjiang

We introduce an efficient open-source python package for the inverse design of three-dimensional photonic nanostructures using the Finite-Difference Time-Domain (FDTD) method. Leveraging a flexible reverse-mode automatic differentiation…

Three-dimensional medical image data and computer-aided decision making, particularly using deep learning, are becoming increasingly important in the medical field. To aid in these developments we introduce PR3DICTR: Platform for Research…

Computer Vision and Pattern Recognition · Computer Science 2026-04-06 Daniel C. MacRae , Luuk van der Hoek , Robert van der Wal , Suzanne P. M. de Vette , Hendrike Neh , Baoqiang Ma , Peter M. A. van Ooijen , Lisanne V. van Dijk

High-throughput computational imaging requires efficient processing algorithms to retrieve multi-dimensional and multi-scale information. In computational phase imaging, phase retrieval (PR) is required to reconstruct both amplitude and…

Image and Video Processing · Electrical Eng. & Systems 2021-09-15 Xuyang Chang , Liheng Bian , Jun Zhang

Resolving single atoms in large-scale volumes has been a goal for atomic resolution microscopy for a long time. Electron microscopy has come close to this goal using a combination of advanced electron optics and computational imaging…

Materials Science · Physics 2023-11-07 Andrey Romanov , Min Gee Cho , Mary Cooper Scott , Colin Ophus , Philipp Pelz

Deep learning-based image enhancement methods face a fundamental trade-off between computational efficiency and representational capacity. For example, although a conventional three-dimensional Look-Up Table (3D LUT) can process a degraded…

Computer Vision and Pattern Recognition · Computer Science 2025-09-30 Liubing Hu , Chen Wu , Anrui Wang , Dianjie Lu , Guijuan Zhang , Zhuoran Zheng

We present the PyHST2 code which is in service at ESRF for phase-contrast and absorption tomography. This code has been engineered to sustain the high data flow typical of the third generation synchrotron facilities (10 terabytes per…

Numerical Analysis · Mathematics 2015-06-02 Alessandro Mirone , Emmanuelle Gouillart , Emmanuel Brun , Paul Tafforeau , Jerome Kieffer

Ptychography is a lensless imaging technique, which considers reconstruction from a set of far-field diffraction patterns obtained by illuminating small overlapping regions of the specimen. In many cases, a distribution of light inside the…

Numerical Analysis · Mathematics 2022-10-05 Frank Filbir , Oleh Melnyk

Microscopy, in particular scanning probe and electron microscopy, has been pivotal in improving our understanding of structure-function relationships at the nanoscale and is by now ubiquitous in most research characterization labs and…

Computed Tomography (CT) using synchrotron radiation is a powerful technique that, compared to lab-CT techniques, boosts high spatial and temporal resolution while also providing access to a range of contrast-formation mechanisms. The…

Image and Video Processing · Electrical Eng. & Systems 2025-01-20 Jiayang Shi , Daniel M. Pelt , K. Joost Batenburg

Hyperspectral neutron computed tomography enables 3D non-destructive imaging of the spectral characteristics of materials. In traditional hyperspectral reconstruction, the data for each neutron wavelength bin is reconstructed separately.…

Various imaging techniques have significantly enhanced our ability to visualize objects embedded within complex media such as biological tissues, fog, atmosphere, or various turbid media. Optical imaging, in particular, offers multiple…

Optics · Physics 2025-05-05 Mingwei He , Sujit K. Sahoo , Chengyuan Xiao , Cuong Dang

We present eMAGPIE (extended Multilevel-Adaptive-Guided Ptychographic Iterative Engine), a stochastic multigrid method for blind ptychographic phase retrieval that jointly recovers the object and the probe. We recast the task as the…

Numerical Analysis · Mathematics 2025-11-04 Borong Zhang , Junjing Deng , Yi Jiang , Zichao Wendy Di

Increasing interest in three-dimensional nanostructures adds impetus to electron microscopy techniques capable of imaging at or below the nanoscale in three dimensions. We present a reconstruction algorithm that takes as input a focal…

3D Lidar imaging can be a challenging modality when using multiple wavelengths, or when imaging in high noise environments (e.g., imaging through obscurants). This paper presents a hierarchical Bayesian algorithm for the robust…

Image and Video Processing · Electrical Eng. & Systems 2021-03-19 Abderrahim Halimi , Aurora Maccarone , Robert Lamb , Gerald S. Buller , Stephen McLaughlin

Road surface reconstruction from aerial images is fundamental for autonomous driving, urban planning, and virtual simulation, where smoothness, compactness, and accuracy are critical quality factors. Existing reconstruction methods often…

Computer Vision and Pattern Recognition · Computer Science 2025-08-22 Oussema Dhaouadi , Johannes Meier , Jacques Kaiser , Daniel Cremers
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