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We consider the problem of global stabilization of an unstable bioreactor model (e.g. for anaerobic digestion), when the measurements are discrete and in finite number ("quantized"), with control of the dilution rate. The model is a…

Optimization and Control · Mathematics 2015-08-12 Francis Mairet , Jean-Luc Gouzé

In a network of dynamical systems, concurrent synchronization is a regime where multiple groups of fully synchronized elements coexist. In the brain, concurrent synchronization may occur at several scales, with multiple ``rhythms''…

Neurons and Cognition · Quantitative Biology 2007-05-23 Quang-Cuong Pham , Jean-Jacques Slotine

We describe a large class of chemical reaction networks, those endowed with a subtle structural property called concordance. We show that the class of concordant networks coincides precisely with the class of networks which, when taken with…

Molecular Networks · Quantitative Biology 2011-09-15 Guy Shinar , Martin Feinberg

Control of multi-level quantum systems is sensitive to implementation errors in the control field and uncertainties associated with system Hamiltonian parameters. A small variation in the control field spectrum or the system Hamiltonian can…

Quantum Physics · Physics 2015-06-23 Andy Koswara , Raj Chakrabarti

Reaction networks are systems in which the populations of a finite number of species evolve through predefined interactions. Such networks are found as modeling tools in many biological disciplines such as biochemistry, ecology,…

Molecular Networks · Quantitative Biology 2015-06-15 Ankit Gupta , Corentin Briat , Mustafa Khammash

A class of polynomial dynamical systems called complex-balanced are locally stable and conjectured to be globally stable. In general, complex-balancing is not a robust property, i.e., small changes in parameter values may result in the loss…

Dynamical Systems · Mathematics 2022-10-26 Polly Y. Yu

This paper is concerned with a constrained stochastic linear-quadratic optimal control problem, in which the terminal state is fixed and the initial state is constrained to lie in a stochastic linear manifold. The controllability of…

Optimization and Control · Mathematics 2019-06-11 Xiuchun Bi , Jingrui Sun , Jie Xiong

External flows of energy, entropy, and matter can cause sudden transitions in the stability of biological and industrial systems, fundamentally altering their dynamical function. How might we control and design these transitions in chemical…

Molecular Networks · Quantitative Biology 2023-06-19 Zachary G. Nicolaou , Schuyler B. Nicholson , Adilson E. Motter , Jason R. Green

Stochastic chemical processes are described by the chemical master equation satisfying the law of mass-action. We first ask whether the dual master equation, which has the same steady state as the chemical master equation, but with inverted…

Motivated by recent progress on the interplay between graph theory, dynamics, and systems theory, we revisit the analysis of chemical reaction networks described by mass action kinetics. For reaction networks possessing a thermodynamic…

Optimization and Control · Mathematics 2012-06-19 Arjan van der Schaft , Shodhan Rao , Bayu Jayawardhana

Biological active matter is typically tightly coupled to chemical reaction networks affecting its assembly-disassembly dynamics and stress generation. We show that localized states can emerge spontaneously if assembly of active matter is…

Biological Physics · Physics 2023-12-15 Luca Barberi , Karsten Kruse

Control using quantized feedback is a fundamental approach to system synthesis with limited communication capacity. In this paper, we address the stabilization problem for unknown linear systems with logarithmically quantized feedback, via…

Optimization and Control · Mathematics 2022-03-11 Feiran Zhao , Xingchen Li , Keyou You

This article is concerned with stability analysis and stabilization of randomly switched nonlinear systems. These systems may be regarded as piecewise deterministic stochastic systems: the discrete switches are triggered by a stochastic…

Optimization and Control · Mathematics 2010-09-08 Debasish Chatterjee , Daniel Liberzon

This paper studies the set of terminal state covariances that are reachable over a finite time horizon from a given initial state covariance for a linear stochastic system with additive noise. For discrete-time systems, a complete…

Systems and Control · Electrical Eng. & Systems 2025-09-22 Fengjiao Liu , Panagiotis Tsiotras

We study the controllability of a coupled system of linear parabolic equations, with non-negativity constraint on the state. We establish two results of controllability to trajectories in large time: one for diagonal diffusion matrices with…

Optimization and Control · Mathematics 2021-05-18 Pierre Lissy , Clément Moreau

In this paper we are concerned with the approximate controllability of a multidimensional semilinear reaction-diffusion equation governed by a multiplicative control, which is locally distributed in the reaction term. For a given initial…

Optimization and Control · Mathematics 2020-06-26 Mohamed Ouzahra

We propose a unifying framework for characterizing pure and mixed state phases of matter across equilibrium, non equilibrium, and metastable regimes. We introduce the concept of locally stable states, defined by the operational property…

Quantum Physics · Physics 2026-05-04 Zhi Li , Raz Firanko , Timothy H. Hsieh

In living cells, chemical reactions are connected by sharing their products and substrates, and form complex networks, e.g. metabolic pathways. Here we developed a theory to predict the sensitivity, i.e. the responses of concentrations and…

Molecular Networks · Quantitative Biology 2016-08-24 Takashi Okada , Atsushi Mochizuki

Homeostasis occurs in a biological system when a chosen output variable remains approximately constant despite changes in an input variable. In this work we specifically focus on biological systems which may be represented as chemical…

Quantitative Methods · Quantitative Biology 2024-07-19 Jiaxin Jin , Grzegorz A. Rempala

In this work we study, at the single molecular level, the thermodynamic and dynamic characteristics of an enzymatic reaction comprising a rate limiting step. We investigate how the stability of the enzyme-state stationary probability…

Subcellular Processes · Quantitative Biology 2015-05-20 Moisés Santillán
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