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Graph Neural Networks (GNNs) have shown remarkable performance on graph-structured data. However, recent empirical studies suggest that GNNs are very susceptible to distribution shift. There is still significant ambiguity about why…

Machine Learning · Computer Science 2023-06-07 Qi Zhu , Yizhu Jiao , Natalia Ponomareva , Jiawei Han , Bryan Perozzi

Drug Discovery is a fundamental and ever-evolving field of research. The design of new candidate molecules requires large amounts of time and money, and computational methods are being increasingly employed to cut these costs. Machine…

Machine Learning · Statistics 2021-05-28 Pietro Bongini , Monica Bianchini , Franco Scarselli

Graph-structured data exhibits universality and widespread applicability across diverse domains, such as social network analysis, biochemistry, financial fraud detection, and network security. Significant strides have been made in…

Machine Learning · Computer Science 2025-11-06 Wei Ju , Siyu Yi , Yifan Wang , Zhiping Xiao , Zhengyang Mao , Hourun Li , Yiyang Gu , Yifang Qin , Nan Yin , Senzhang Wang , Xinwang Liu , Philip S. Yu , Ming Zhang

Graphs are ubiquitous data structures for representing interactions between entities. With an emphasis on the use of graphs to represent chemical molecules, we explore the task of learning to generate graphs that conform to a distribution…

Machine Learning · Computer Science 2019-03-08 Qi Liu , Miltiadis Allamanis , Marc Brockschmidt , Alexander L. Gaunt

Dynamic multi-relational graphs are an expressive relational representation for data enclosing entities and relations of different types, and where relationships are allowed to vary in time. Addressing predictive tasks over such data…

Machine Learning · Computer Science 2024-03-19 Asma Sattar , Georgios Deligiorgis , Marco Trincavelli , Davide Bacciu

Graph NAS has emerged as a promising approach for autonomously designing GNN architectures by leveraging the correlations between graphs and architectures. Existing methods fail to generalize under distribution shifts that are ubiquitous in…

Machine Learning · Computer Science 2024-12-31 Peiwen Li , Xin Wang , Zeyang Zhang , Yijian Qin , Ziwei Zhang , Jialong Wang , Yang Li , Wenwu Zhu

We study the problem of lifelong graph learning in an open-world scenario, where a model needs to deal with new tasks and potentially unknown classes. We utilize Out-of-Distribution (OOD) detection methods to recognize new classes and adapt…

Machine Learning · Computer Science 2023-10-20 Marcel Hoffmann , Lukas Galke , Ansgar Scherp

Graph class-incremental learning (GCIL) allows graph neural networks (GNNs) to adapt to evolving graph analytical tasks by incrementally learning new class knowledge while retaining knowledge of old classes. Existing GCIL methods primarily…

Machine Learning · Computer Science 2025-07-24 Jiazhen Chen , Zheng Ma , Sichao Fu , Mingbin Feng , Tony S. Wirjanto , Weihua Ou

We view molecular optimization as a graph-to-graph translation problem. The goal is to learn to map from one molecular graph to another with better properties based on an available corpus of paired molecules. Since molecules can be…

Machine Learning · Computer Science 2019-01-30 Wengong Jin , Kevin Yang , Regina Barzilay , Tommi Jaakkola

Molecular graph neural networks (GNNs) often focus exclusively on XYZ-based geometric representations and thus overlook valuable chemical context available in public databases like PubChem. This work introduces a multimodal framework that…

Machine Learning · Computer Science 2025-05-20 Can Polat , Hasan Kurban , Erchin Serpedin , Mustafa Kurban

Graph Neural Networks (GNNs) have attracted increasing attention in recent years and have achieved excellent performance in semi-supervised node classification tasks. The success of most GNNs relies on one fundamental assumption, i.e., the…

Machine Learning · Computer Science 2024-12-03 Junchao Lin , Yuan Wan , Jingwen Xu , Xingchen Qi

A variety of real-world tasks involve the classification of images into pre-determined categories. Designing image classification algorithms that exhibit robustness to acquisition noise and image distortions, particularly when the available…

Machine Learning · Statistics 2016-03-10 Umamahesh Srinivas

Deep generative models for graphs have exhibited promising performance in ever-increasing domains such as design of molecules (i.e, graph of atoms) and structure prediction of proteins (i.e., graph of amino acids). Existing work typically…

Machine Learning · Computer Science 2021-01-21 Wenbin Zhang , Liming Zhang , Dieter Pfoser , Liang Zhao

Graph Neural Networks (GNNs) are state-of-the-art models for performing prediction tasks on graphs. While existing GNNs have shown great performance on various tasks related to graphs, little attention has been paid to the scenario where…

Machine Learning · Computer Science 2023-08-15 Yu Song , Donglin Wang

How to obtain informative representations of molecules is a crucial prerequisite in AI-driven drug design and discovery. Recent researches abstract molecules as graphs and employ Graph Neural Networks (GNNs) for molecular representation…

Biomolecules · Quantitative Biology 2020-10-30 Yu Rong , Yatao Bian , Tingyang Xu , Weiyang Xie , Ying Wei , Wenbing Huang , Junzhou Huang

Scene graphs provide structured abstractions for scene understanding, yet they often overfit to spurious correlations, severely hindering out-of-distribution generalization. To address this limitation, we propose CURVE, a causality-inspired…

Computer Vision and Pattern Recognition · Computer Science 2026-01-29 Yue Liang , Jiatong Du , Ziyi Yang , Yanjun Huang , Hong Chen

Climate models are essential to understand and project climate change, yet long-standing biases and uncertainties in their projections remain. This is largely associated with the representation of subgrid-scale processes, particularly…

Inferring cause-effect relationships from observational data has gained significant attention in recent years, but most methods are limited to scalar random variables. In many important domains, including neuroscience, psychology, social…

Machine Learning · Statistics 2025-06-06 Konstantin Göbler , Tobias Windisch , Mathias Drton

Node classification on graphs is of great importance in many applications. Due to the limited labeling capability and evolution in real-world open scenarios, novel classes can emerge on unlabeled testing nodes. However, little attention has…

Machine Learning · Computer Science 2024-04-01 Yucheng Jin , Yun Xiong , Juncheng Fang , Xixi Wu , Dongxiao He , Xing Jia , Bingchen Zhao , Philip Yu

Imitation learning, which learns agent policy by mimicking expert demonstration, has shown promising results in many applications such as medical treatment regimes and self-driving vehicles. However, it remains a difficult task to interpret…

Machine Learning · Computer Science 2024-01-31 Tianxiang Zhao , Wenchao Yu , Suhang Wang , Lu Wang , Xiang Zhang , Yuncong Chen , Yanchi Liu , Wei Cheng , Haifeng Chen
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