Related papers: On the structure of sequences with minimal maximal…
All known terrestrial proteins are coded as continuous strings of ~20 amino acids. The patterns formed by the repetitions of elements in groups of finite sequences describes the natural architectures of protein families. We present a method…
Given a relational structure M on n elements, let D(M) be the minimum quantifier rank of a first order formula identifying M up to isomorphism in the class of n-element structures. The obvious upper bound is D(M)\le n. We show that if the…
Recently, Avgustinovich, Kitaev, and Taranenko defined five types of $(k, \ell)-$crucial permutations, which are maximal permutations that do not contain an increasing subsequence of length $k$ or a decreasing subsequence of length $\ell$.…
Given two strings $S$ and $P$, the Episode Matching problem is to find the shortest substring of $S$ that contains $P$ as a subsequence. The best known upper bound for this problem is $\tilde O(nm)$ by Das et al. (1997) , where $n,m$ are…
We show that there is a very simple approach to determine the 2-adic complexity of periodic binary sequences with ideal two-level autocorrelation. This is the first main result by H. Xiong, L. Qu, and C. Li, IEEE Transactions on Information…
Since the introduction of the Kolmogorov complexity of binary sequences in the 1960s, there have been significant advancements in the topic of complexity measures for randomness assessment, which are of fundamental importance in theoretical…
Longest Run Subsequence is a problem introduced recently in the context of the scaffolding phase of genome assembly (Schrinner et al., WABI 2020). The problem asks for a maximum length subsequence of a given string that contains at most one…
In this paper, a new method is presented to compute the 2-adic complexity of pseudo-random sequences. With this method, the 2-adic complexities of all the known sequences with ideal 2-level autocorrelation are uniformly determined. Results…
In this paper, we focus on the design of binary constant weight codes that admit low-complexity encoding and decoding algorithms, and that have a size $M=2^k$. For every integer $\ell \geq 3$, we construct a $(n=2^\ell, M=2^{k_{\ell}},…
We revisit the complexity of approximate pattern matching in an elastic-degenerate string. Such a string is a sequence of $n$ finite sets of strings of total length $N$, and compactly describes a collection of strings obtained by first…
A practical measure for the complexity of sequences of symbols (``strings'') is introduced that is rooted in automata theory but avoids the problems of Kolmogorov-Chaitin complexity. This physical complexity can be estimated for ensembles…
String matching is the problem of deciding whether a given $n$-bit string contains a given $k$-bit pattern. We study the complexity of this problem in three settings. Communication complexity. For small $k$, we provide near-optimal upper…
The sequence a_1,...,a_m is a common subsequence in the set of permutations S = {p_1,...,p_k} on [n] if it is a subsequence of p_i(1),...,p_i(n) and p_j(1),...,p_j(n) for some distinct p_i, p_j in S. Recently, Beame and Huynh-Ngoc (2008)…
A sequence of positive integers $(a_1,a_2,\ldots,a_k)$ is called $\ell$-additive if $a_1+a_2+\cdots+a_k=\ell a_1$ or $\ell a_k$. In this paper, we prove that for all $k\geq3$, if $n$ is sufficiently large, then every permutation of…
For $l > 1$, the $l$-edge-connectivity $\kappa'_l(G)$ of a connected graph $G$ is defined as the minimum number of edges whose removal leaves a graph with at least $l$ components. A graph is minimally $(k,l)$-edge-connected if…
In this paper, we study some new factorizations of period-doubling sequences over a $k$-letter alphabet, where $k\geq 2$. First, we define the combinatorial and arithmetic properties of these sequences. Then, we define the kernel words of…
The length function $\ell_2(r,R)$ is the smallest length of a binary linear code with codimension (redundancy) $r$ and covering radius $R$. We obtain the following new upper bounds on $\ell_2(r,R)$, which yield a decrease $\Delta(r,R)$…
The autocorrelation and the linear complexity of a key stream sequence in a stream cipher are important cryptographic properties. Many sequences with these good properties have interleaved structure, three classes of binary sequences of…
Correlation measure of order $k$ is an important measure of randomness in binary sequences. This measure tries to look for dependence between several shifted version of a sequence. We study the relation between the correlation measure of…
The matching basis in field extentions is introduced by S. Eliahou and C. Lecouvey in [2]. In this paper we define the minimal and maximal linear matching property for field extensions and prove that if K is not algebraically closed, then K…