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We propose a direct optimization framework for learning reduced and sparse chemical reaction networks (CRNs) from time-series trajectory data. In contrast to widely used indirect methods-such as those based on sparse identification of…

Molecular Networks · Quantitative Biology 2025-08-27 Maurice Filo , Mustafa Khammash

Inspired by recent theoretical arguments, physics-informed echo state network (ESN) is discussed on the attempt to train a reservoir model absolutely in physics-informed manner. As the plainest work on such a purpose, an ODE (ordinary…

Machine Learning · Computer Science 2020-11-16 Dong Keun Oh

Physics-Informed Neural Networks (PINNs) frequently encounter difficulties in accurately resolving shock waves within high-speed compressible flows, a failure largely attributed to the "gradient pathology" arising from extreme stiffness at…

Computational Physics · Physics 2026-05-25 Darui Zhao , Ze Tao , Fujun Liu

Atomic-scale modeling has advanced rapidly through integration of machine learning, yet a key bottleneck remains. Even with an accurate potential energy surface and a clear target material, we still lack a practical atomistic dynamics…

Materials Science · Physics 2026-05-18 Wonseok Jeong , Francesca Tavazza , Brian DeCost

Previous studies have shown that spike-timing-dependent plasticity (STDP) can be used in spiking neural networks (SNN) to extract visual features of low or intermediate complexity in an unsupervised manner. These studies, however, used…

Computer Vision and Pattern Recognition · Computer Science 2018-03-12 Saeed Reza Kheradpisheh , Mohammad Ganjtabesh , Simon J Thorpe , Timothée Masquelier

Physics-Informed Neural Network (PINN) is a novel multi-task learning framework useful for solving physical problems modeled using differential equations (DEs) by integrating the knowledge of physics and known constraints into the…

Machine Learning · Computer Science 2024-09-18 Shivprasad Kathane , Shyamprasad Karagadde

Chemical Reaction Neural Networks (CRNNs) have emerged as an interpretable machine learning framework for discovering reaction kinetics directly from data, while strictly adhering to the Arrhenius and mass action laws. However, standard…

Chemical Physics · Physics 2026-05-15 Benjamin C. Koenig , Sili Deng

Finite element modeling is a well-established tool for structural analysis, yet modeling complex structures often requires extensive pre-processing, significant analysis effort, and considerable time. This study addresses this challenge by…

In this article, we propose a novel Stabilized Physics Informed Neural Networks method (SPINNs) for solving wave equations. In general, this method not only demonstrates theoretical convergence but also exhibits higher efficiency compared…

Numerical Analysis · Mathematics 2024-03-29 Yuling Jiao , Yuhui Liu , Jerry Zhijian Yang , Cheng Yuan

Coarse-grained modeling in molecular simulations serves not only to extend accessible time and length scales beyond atomistic limits, but also to reduce high-dimensional chemical data to low-dimensional representations that expose the…

Chemical Physics · Physics 2026-05-19 Michael N. Sakano , Alejandro Strachan

Spiking Neural Networks (SNNs) have emerged as a promising tool for event-based optical flow estimation tasks due to their ability to leverage spatio-temporal information and low-power capabilities. However, the performance of SNN models is…

Computer Vision and Pattern Recognition · Computer Science 2025-04-29 Hongze Sun , Jun Wang , Wuque Cai , Duo Chen , Qianqian Liao , Jiayi He , Yan Cui , Dezhong Yao , Daqing Guo

Physics-Informed Neural Networks (PINNs) and Neural Ordinary Differential Equations (NODEs) represent two distinct machine learning frameworks for modeling nonlinear neuronal dynamics. This study systematically evaluates their performance…

Dynamical Systems · Mathematics 2026-03-31 Nikolaos M. Matzakos , Chrisovalantis Sfyrakis

Spiking Neural Networks (SNNs) have emerged as an attractive alternative to traditional deep learning frameworks, since they provide higher computational efficiency in event driven neuromorphic hardware. However, the state-of-the-art (SOTA)…

Neural and Evolutionary Computing · Computer Science 2021-09-05 Gourav Datta , Souvik Kundu , Peter A. Beerel

Chemical reaction optimisation is essential for synthetic chemistry and pharmaceutical development, demanding the extensive exploration of many reaction parameters to achieve efficient and sustainable processes. We report $\alpha$-PSO, a…

Ordinary differential equation (ODE) is widely used in modeling biological and physical processes in science. In this article, we propose a new reproducing kernel-based approach for estimation and inference of ODE given noisy observations.…

Methodology · Statistics 2021-10-26 Xiaowu Dai , Lexin Li

Noise injection-based method has been shown to be able to improve the robustness of artificial neural networks in previous work. In this work, we propose a novel noise injection-based training scheme for better model robustness.…

Machine Learning · Computer Science 2023-05-30 Zeliang Zhang , Jinyang Jiang , Minjie Chen , Zhiyuan Wang , Yijie Peng , Zhaofei Yu

We investigate the potential of numerical algorithms to decipher the kinetic parameters involved in multi-step chemical reactions. To this end we study a dimerization kinetics of protein as a model system. We follow the dimerization…

Biological Physics · Physics 2014-12-24 Srijeeta Talukder , Shrabani Sen , Ralf Metzler , Suman K Banik , Pinaki Chaudhury

Neural networks (NNs) can achieved high performance in various fields such as computer vision, and natural language processing. However, deploying NNs in resource-constrained safety-critical systems has challenges due to uncertainty in the…

Machine Learning · Computer Science 2024-01-17 Soyed Tuhin Ahmed

Chemical reaction prediction remains a fundamental challenge in organic chemistry, where existing machine learning models face two critical limitations: sensitivity to input permutations (molecule/atom orderings) and inadequate modeling of…

Machine Learning · Computer Science 2026-02-03 Runhan Shi , Letian Chen , Gufeng Yu , Yang Yang

Physics-Informed Neural Networks (PINNs) seek to solve partial differential equations (PDEs) with deep learning. Mainstream approaches that deploy fully-connected multi-layer deep learning architectures require prolonged training to achieve…

Machine Learning · Computer Science 2025-12-16 Shaghayegh Fazliani , Zachary Frangella , Madeleine Udell
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