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Whether aneuploid cells with diverse karyotypes have any properties in common has a been a subject of intense interest. A recent study by Terhorst et al. (1) reinvestigated the common aneuploidy gene expression (CAGE), disputing the…

The evolution of the full repertoire of proteins encoded in a given genome is mostly driven by gene duplications, deletions, and sequence modifications of existing proteins. Indirect information about relative rates and other intrinsic…

Genomics · Quantitative Biology 2008-03-25 Jacob Bock Axelsen , Koon-Kiu Yan , Sergei Maslov

The vast majority of connections between complex disease and common genetic variants were identified through meta-analysis, a powerful approach that enables large samples sizes while protecting against common artifacts due to population…

In this study, we calculate the $T$=300 K scattering and thermoelectric transport properties of rhombohedral GeTe using first-principles modeling. The room-temperature phase of GeTe has a layered structure, with cross-plane and in-plane…

Materials Science · Physics 2019-08-07 Vahid Askarpour , Jesse Maassen

We show that electrowetting (EW) with structured electrodes significantly modifies the distribution of drops condensing onto flat hydrophobic surfaces by aligning the drops and by enhancing coalescence. Numerical calculations demonstrate…

Fluid Dynamics · Physics 2018-05-30 Davood Baratian , Ranabir Dey , Harmen Hoek , Dirk van den Ende , Frieder Mugele

Epilepsy is a neurological condition such that it affects the brain and the nervous system. It is characterized by recurrent seizures, which are physical reactions to sudden, usually brief, excessive electrical discharges in a group of…

Signal Processing · Electrical Eng. & Systems 2018-07-30 Asmaa Hamad , Aboul Ella Hassanien , Aly A. Fahmy , Essam H. Houssein

A method is proposed to analyze the heartbeat waveform that can yield a reliable characterization of the structure after only a few pulses. The measure suggested is entropy index that is related to the one found effective in describing…

Medical Physics · Physics 2007-05-23 Rudolph C. Hwa

Analyses of individual atherosclerotic plaques are mostly descriptive, relying -- for example -- on histological classification by spectral analysis of ultrasound waves or staining and observing particular cellular components. Such passive…

Tissues and Organs · Quantitative Biology 2019-11-26 Navid Mohammad Mirzaei , Pak-Wing Fok , William S. Weintraub

Although hypoxia is a major stress on physiological processes, several human populations have survived for millennia at high altitudes, suggesting that they have adapted to hypoxic conditions. This hypothesis was recently corroborated by…

Populations and Evolution · Quantitative Biology 2012-11-14 Gorka Alkorta-Aranburu , Cynthia M. Beall , David B. Witonsky , Amha Gebremedhin , Jonathan K. Pritchard , Anna Di Rienzo

This work is devoted to investigating the evolution of concentration in a genetic regulation system, when the synthesis reaction rate is under additive and multiplicative asymmetric stable L\'evy fluctuations. By focusing on the impact of…

Biological Physics · Physics 2018-03-02 Hui Wang , Xiujun Cheng , Jinqiao Duan , Jürgen Kurths , Xiaofan Li

Through experimental studies, many details of the pathway of integrin $\alpha_{\rm IIb}\beta_3$ activation by ADP during the platelet aggregation process have been mapped out. ADP binds to two separate G protein coupled receptors on…

Molecular Networks · Quantitative Biology 2025-03-26 Keshav B. Patel , Wolfgang Bergmeier , Aaron L. Fogelson

I present a theory of Alzheimer's Disease (AD) that explains its symptoms, pathology, and risk factors. To do this, I introduce a new theory of brain plasticity that elucidates the physiological roles of AD-related agents. New events…

Neurons and Cognition · Quantitative Biology 2024-05-21 Ari Rappoport

Transcription commonly occurs in bursts, with alternating productive (ON) and quiescent (OFF) periods, governing mRNA production rates. Yet, how transcription is regulated through bursting dynamics remains unresolved. Here, we conduct…

Molecular Networks · Quantitative Biology 2025-11-11 Po-Ta Chen , Michal Levo , Benjamin Zoller , Thomas Gregor

It has been recently argued that the depletion attraction may play an important role in different aspects of the cellular organization, ranging from the organization of transcriptional activity in transcription factories to the formation of…

Biomolecules · Quantitative Biology 2015-05-13 M. Osella , M. Caselle

Biological systems must be robust for stable function against perturbations, but robustness alone is not sufficient. The ability to switch between appropriate states (phenotypes) in response to different conditions is essential for…

Populations and Evolution · Quantitative Biology 2023-04-25 Ayaka Sakata , Kunihiko Kaneko

Genomic phenotypes, such as DNA methylation and chromatin accessibility, can be used to characterize the transcriptional and regulatory activity of DNA within a cell. Recent technological advances have made it possible to measure such…

Methodology · Statistics 2016-11-15 Jean Morrison , Noah Simon , Daniela Witten

The transport of platelets in blood is commonly assumed to obey an advection-diffusion equation. Here we propose a disruptive view, by showing that the random part of their velocity is governed by a fat-tailed probability distribution,…

Computational Physics · Physics 2021-09-17 Christos Kotsalos , Karim Zouaoui Boudjeltia , Ritabrata Dutta , Jonas Latt , Bastien Chopard

Modelling the underlying mechanisms of neurodegenerative diseases demands methods that capture heterogeneous and spatially varying dynamics from sparse, high-dimensional neuroimaging data. Integrating partial differential equation (PDE)…

Image and Video Processing · Electrical Eng. & Systems 2025-09-19 Sanduni Pinnawala , Annabelle Hartanto , Ivor J. A. Simpson , Peter A. Wijeratne

Studies of flow through the human airway have shown that inhalation time (IT) and secondary flow structures can play important roles in particle deposition. However, the effects of varying IT in conjunction with respiratory rate (RR) on…

Fluid Dynamics · Physics 2021-01-26 Manikantam G. Gaddam , Arvind Santhanakrishnan

As a result of climate change, many populations have to modify their range to follow the suitable areas - their "climate envelope" - often risking extinction. During this migration process, they may face absolute boundaries to dispersal,…

Analysis of PDEs · Mathematics 2009-07-07 Lionel Roques , Alain Roques , Henri Berestycki , André Kretzschmar