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Alzheimer's disease (AD) is a serious neurodegenerative disease consisting of four stages where the illness gets progressively worse. It is of great significance to detect the gene regulatory mechanism as AD progresses and, thus, to help us…

Methodology · Statistics 2023-03-14 Shanjun Mao , Xiaodan Fan

Atherosclerotic plaques are fatty growths in artery walls that cause heart attacks and strokes. Plaque formation is orchestrated by macrophages that are recruited to the artery wall to consume and remove blood-derived lipids, such as…

Cell Behavior · Quantitative Biology 2022-05-12 M. G. Watson , K. L. Chambers , M. R. Myerscough

We present a new method for the detection of gene pathways associated with a multivariate quantitative trait, and use it to identify causal pathways associated with an imaging endophenotype characteristic of longitudinal structural change…

Applications · Statistics 2012-04-10 Matt Silver , Eva Janousova , Xue Hua , Paul M. Thompson , Giovanni Montana

Between-species coevolution, and in particular antagonistic host-parasite coevolution, is a major process shaping within-species diversity. In this paper we investigate the role of various stochastic processes affecting the outcome of the…

Populations and Evolution · Quantitative Biology 2020-12-08 Wolfgang Stephan , Aurélien Tellier

Variability in radiation-related health risk and genetic susceptibility to radiation effects within a population is a key issue for radiation protection. Besides differences in the health and biological effects of the same radiation dose,…

Biological Physics · Physics 2025-02-27 Péter Füri , Árpád Farkas , Werner Hofmann , Balázs G. Madas

Breath acetone represents a promising non-invasive biomarker for monitoring fat oxidation during exercise. However, its utility is limited by confounding factors, as well as by the fact that significant changes in concentration occur only…

A real-time recording setup combining exhaled breath VOC measurements by proton transfer reaction mass spectrometry (PTR-MS) with hemodynamic and respiratory data is presented. Continuous automatic sampling of exhaled breath is implemented…

Quantitative Methods · Quantitative Biology 2009-07-20 J. King , A. Kupferthaler , K. Unterkofler , H. Koc , S. Teschl , G. Teschl , W. Miekisch , J. Schubert , H. Hinterhuber , A. Amann

Evolutionary adaptation is often likened to climbing a hill or peak. While this process is simple for fitness landscapes where mutations are independent, the interaction between mutations (epistasis) as well as mutations at loci that affect…

Populations and Evolution · Quantitative Biology 2013-02-15 Bjørn Østman , Arend Hintze , Christoph Adami

Understanding intraventricular hemodynamics requires compact and physically interpretable representations of the underlying flow structures, as characteristic flow patterns are closely associated with cardiovascular conditions and can…

The nucleotides ATP and ADP regulate many aspects of endothelial cell (EC) biology, including intracellular calcium concentrations, focal adhesion activation, cytoskeletal organization, and cellular motility. In vivo, ECs are constantly…

Biological Physics · Physics 2018-09-05 Ezio Di Costanzo , Abdul I. Barakat , Giuseppe Pontrelli

Hypertension is the leading global cause of cardiovascular disease and premature death. Distinct hypertension subtypes may vary in their prognoses and require different treatments. An individual's risk for hypertension is determined by…

Quantitative Methods · Quantitative Biology 2021-11-23 Yiming Li , Sanjiv J. Shah , Donna Arnett , Ryan Irvin , Yuan Luo

Although many phenotypic traits are determined by a large number of genetic variants, the behavior of allele frequencies in a polygenic trait is not completely understood. The problem is especially challenging when the quantitative trait of…

Populations and Evolution · Quantitative Biology 2026-03-31 Archana Devi , Kavita Jain

The role of aliphatic side groups on the formation of astronomical unidentified infrared emission (UIE) features is investigated by applying the density functional theory (DFT) to a series of molecules with mixed aliphatic-aromatic…

Astrophysics of Galaxies · Physics 2015-06-23 SeyedAbdolreza Sadjadi , Yong Zhang , Sun Kwok

Neurodegenerative diseases are characterized as the progressive loss of neural cells, e.g. neurons, glial cells. Ageing, monogenic variations, viral infections, and many other factors are determined and speculated as causes for them. While…

Molecular Networks · Quantitative Biology 2019-09-18 Abdulahad Bayraktar , Tugba Onal-Suzek , Baris Ethem Suzek , Omur Baysal

Characterizing the brain dynamics during different cortical states can reveal valuable information about its patterns across various cognitive processes. In particular, studying the differences between awake and sleep stages can shed light…

High-dimensional neuroimaging data presents challenges for assessing neurodegenerative diseases due to complex non-linear relationships. Variational Autoencoders (VAEs) can encode scans into lower-dimensional latent spaces capturing…

In modern scientific studies, it is often imperative to determine whether a set of phenotypes is affected by a single factor. If such an influence is identified, it becomes essential to discern whether this effect is contingent upon…

Methodology · Statistics 2024-03-22 Srijan Chattopadhyay , Swapnaneel Bhattacharyya , Sevantee Basu

A common developmental process, called branching morphogenesis, generates the epithelial trees in a variety of organs, including the lungs, kidneys, and glands. How branching morphogenesis can create epithelial architectures of very…

Tissues and Organs · Quantitative Biology 2021-03-02 Christine Lang , Lisa Conrad , Dagmar Iber

We show that non-interacting disordered electrons on a Bethe lattice display a new intermediate phase which is delocalized but non-ergodic, i.e. it is characterized by Poisson instead of GOE statistics. The physical signature of this phase…

Disordered Systems and Neural Networks · Physics 2012-12-04 G. Biroli , A. C. Ribeiro-Teixeira , M. Tarzia

Dominance is usually considered a constant value that describes the relative difference in fitness or phenotype between heterozygotes and the average of homozygotes at a focal polymorphic locus. However, the observed dominance can vary with…

Populations and Evolution · Quantitative Biology 2023-12-05 Juan Li , Claudia Bank