English
Related papers

Related papers: Overlapping Biclustering

200 papers

Recently, graph neural networks have been adopted in a wide variety of applications ranging from relational representations to modeling irregular data domains such as point clouds and social graphs. However, the space of graph neural…

Machine Learning · Computer Science 2018-12-14 Marcel Nassar

Graph clustering involves the task of dividing nodes into clusters, so that the edge density is higher within clusters as opposed to across clusters. A natural, classic and popular statistical setting for evaluating solutions to this…

Machine Learning · Statistics 2016-11-17 Yudong Chen , Sujay Sanghavi , Huan Xu

Graph partitioning is a key fundamental problem in the area of big graph computation. Previous works do not consider the practical requirements when optimizing the big data analysis in real applications. In this paper, motivated by…

Databases · Computer Science 2024-04-10 Baoling Ning , Jianzhong Li

In vertex recoloring, we are given $n$ vertices with their initial coloring, and edges arrive in an online fashion. The algorithm must maintain a valid coloring by recoloring vertices, at a cost. The problem abstracts a scenario of job…

Data Structures and Algorithms · Computer Science 2025-01-13 Boaz Patt-Shamir , Adi Rosen , Seeun William Umboh

Graph clustering is a fundamental technique in data analysis with applications in many different fields. While there is a large body of work on clustering undirected graphs, the problem of clustering directed graphs is much less understood.…

Physics and Society · Physics 2025-01-31 James Martin , Tim Rogers , Luca Zanetti

We explore Cluster Editing and its generalization Correlation Clustering with a new operation called permissive vertex splitting which addresses finding overlapping clusters in the face of uncertain information. We determine that both…

Data Structures and Algorithms · Computer Science 2024-08-30 Matthias Bentert , Alex Crane , Pål Grønås Drange , Felix Reidl , Blair D. Sullivan

We consider hypergraph visualizations that represent vertices as points in the plane and hyperedges as curves passing through the points of their incident vertices. Specifically, we consider several different variants of this problem by (a)…

Computational Geometry · Computer Science 2025-06-09 Alexander Dobler , Stephen Kobourov , Debajyoti Mondal , Martin Nöllenburg

Community detection in graphs is a problem that is likely to be relevant whenever network data appears, and consequently the problem has received much attention with many different methods and algorithms applied. However, many of these…

Combinatorics · Mathematics 2025-05-16 Vilhelm Agdur

In the Colored Clustering problem, one is asked to cluster edge-colored (hyper-)graphs whose colors represent interaction types. More specifically, the goal is to select as many edges as possible without choosing two edges that share an…

Data Structures and Algorithms · Computer Science 2023-02-02 Leon Kellerhals , Tomohiro Koana , Pascal Kunz , Rolf Niedermeier

We investigate the parameterized complexity of the graph editing problem called Editing to a Graph with a Given Degree Sequence, where the aim is to obtain a graph with a given degree sequence \sigma by at most k vertex or edge deletions…

Data Structures and Algorithms · Computer Science 2016-01-14 Petr A. Golovach , George B. Mertzios

Biclustering involves the simultaneous clustering of objects and their attributes, thus defining local two-way clustering models. Recently, efficient algorithms were conceived to enumerate all biclusters in real-valued datasets. In this…

Machine Learning · Computer Science 2015-06-04 Saullo Haniell Galvão de Oliveira , Rosana Veroneze , Fernando José Von Zuben

We study the problem of edge partitioning, where the goal is to partition the edge set of a graph into several parts. The replication factor of a vertex $v$ is the number of parts that contain edges incident to $v$. The goal is to minimize…

Discrete Mathematics · Computer Science 2026-05-08 Alexander Yakunin , Andrey Kupavskii , Alexander Sushin , Stanislav Moiseev

Correlation clustering seeks a partition of the vertex set of a given graph/network into groups of closely related, or just close enough, vertices so that elements of different groups are not close to each other. The problem has been…

Social and Information Networks · Computer Science 2024-12-05 Faisal N. Abu-Khzam , Lucas Isenmann , Sergio Thoumi

The Subgraph Isomorphism problem asks, given a host graph G on n vertices and a pattern graph P on k vertices, whether G contains a subgraph isomorphic to P. The restriction of this problem to planar graphs has often been considered. After…

Discrete Mathematics · Computer Science 2015-03-19 Paul Bonsma

In this note, we fix a graph $H$ and ask into how many vertices can each vertex of a clique of size $n$ can be "split" such that the resulting graph is $H$-free. Formally: A graph is an $(n,k)$-graph if its vertex sets is a pairwise…

Combinatorics · Mathematics 2025-02-05 Maria Axenovich , Ryan R. Martin

In this paper we consider the separability problem for bipartite quantum states arising from graphs. Earlier it was proved that the degree criterion is the graph-theoretic counterpart of the familiar positive partial transpose criterion for…

Quantum Physics · Physics 2016-07-29 Supriyo Dutta , Bibhas Adhikari , Subhashish Banerjee , R. Srikanth

We study a family of graph clustering problems where each cluster has to satisfy a certain local requirement. Formally, let $\mu$ be a function on the subsets of vertices of a graph $G$. In the $(\mu,p,q)$-PARTITION problem, the task is to…

Data Structures and Algorithms · Computer Science 2017-11-13 Daniel Lokshtanov , Dániel Marx

We present an algorithm for determining whether a bipartite graph $G$ is 2-chordal (formerly doubly chordal bipartite). At its core this algorithm is an extension of the existing efficient algorithm for determining whether a graph is…

Combinatorics · Mathematics 2021-04-13 Austin Alderete

We study the imbalance problem on complete bipartite graphs. The imbalance problem is a graph layout problem and is known to be NP-complete. Graph layout problems find their applications in the optimization of networks for parallel computer…

Discrete Mathematics · Computer Science 2021-11-23 Steven Ge , Toshiya Itoh

In the \textsc{Coloring Reconfiguration} problem, we are given two proper $k$-colorings of a graph and asked to decide whether one can be transformed into the other by repeatedly applying a specified recoloring rule, while maintaining a…

Data Structures and Algorithms · Computer Science 2025-11-11 Janosch Fuchs , Rin Saito , Tatsuhiro Suga , Takahiro Suzuki , Yuma Tamura