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Learning from heterogeneous data poses challenges such as combining data from various sources and of different types. Meanwhile, heterogeneous data are often associated with missingness in real-world applications due to heterogeneity and…

Machine Learning · Computer Science 2021-02-26 Yu Gong , Hossein Hajimirsadeghi , Jiawei He , Thibaut Durand , Greg Mori

Accurately quantifying uncertainty in predictions and projections arising from irreducible internal climate variability is critical for informed decision making. Such uncertainty is typically assessed using ensembles produced with physics…

Machine Learning · Computer Science 2026-02-09 Parsa Gooya , Reinel Sospedra-Alfonso , Johannes Exenberger

While Self-Supervised Learning has helped reap the benefit of the scale from the available unlabeled data, the learning paradigms are continuously being bettered. We present a new pre-training strategy named ccc-wav2vec 2.0, which uses…

Computation and Language · Computer Science 2023-05-16 Vasista Sai Lodagala , Sreyan Ghosh , S. Umesh

Cell clustering is crucial for uncovering cellular heterogeneity in single-cell RNA sequencing (scRNA-seq) data by identifying cell types and marker genes. Despite its importance, benchmarks for scRNA-seq clustering methods remain…

Genomics · Quantitative Biology 2025-12-03 Ping Xu , Zaitian Wang , Zhirui Wang , Pengjiang Li , Jiajia Wang , Ran Zhang , Pengfei Wang , Yuanchun Zhou

Variational Auto-Encoder (VAE) has been widely adopted in text generation. Among many variants, recurrent VAE learns token-wise latent variables with each conditioned on the preceding ones, which captures sequential variability better in…

Computation and Language · Computer Science 2022-11-24 Jinyi Hu , Xiaoyuan Yi , Wenhao Li , Maosong Sun , Xing Xie

Unsupervised representation learning holds the promise of exploiting large amounts of unlabeled data to learn general representations. A promising technique for unsupervised learning is the framework of Variational Auto-encoders (VAEs).…

Computer Vision and Pattern Recognition · Computer Science 2020-04-09 Kamal Gupta , Saurabh Singh , Abhinav Shrivastava

Recent research showed that an autoencoder trained with speech of a single speaker, called exemplar autoencoder (eAE), can be used for any-to-one voice conversion (VC). Compared to large-scale many-to-many models such as AutoVC, the eAE…

Sound · Computer Science 2022-04-13 Weida Liang , Lantian Li , Wenqiang Du , Dong Wang

This paper presents an emotion-regularized conditional variational autoencoder (Emo-CVAE) model for generating emotional conversation responses. In conventional CVAE-based emotional response generation, emotion labels are simply used as…

Computation and Language · Computer Science 2021-04-20 Yu-Ping Ruan , Zhen-Hua Ling

We propose a Deep Variational Clustering (DVC) framework for unsupervised representation learning and clustering of large-scale medical images. DVC simultaneously learns the multivariate Gaussian posterior through the probabilistic…

Computer Vision and Pattern Recognition · Computer Science 2021-09-23 Farzin Soleymani , Mohammad Eslami , Tobias Elze , Bernd Bischl , Mina Rezaei

We propose the Motion Capsule Autoencoder (MCAE), which addresses a key challenge in the unsupervised learning of motion representations: transformation invariance. MCAE models motion in a two-level hierarchy. In the lower level, a…

Computer Vision and Pattern Recognition · Computer Science 2021-10-04 Ziwei Xu , Xudong Shen , Yongkang Wong , Mohan S Kankanhalli

Uncovering emergent concepts across transformer layers remains a significant challenge because the residual stream linearly mixes and duplicates information, obscuring how features evolve within large language models. Current research…

Machine Learning · Computer Science 2025-07-18 Ankur Garg , Xuemin Yu , Hassan Sajjad , Samira Ebrahimi Kahou

Single-cell RNA sequencing has transformed biology by enabling the measurement of gene expression at cellular resolution, providing information for cell types, states, and disease contexts. Recently, single-cell foundation models have…

Machine Learning · Computer Science 2025-10-13 Oussama Kharouiche , Aris Markogiannakis , Xiao Fei , Michail Chatzianastasis , Michalis Vazirgiannis

Diverse and accurate vision+language modeling is an important goal to retain creative freedom and maintain user engagement. However, adequately capturing the intricacies of diversity in language models is challenging. Recent works commonly…

Computer Vision and Pattern Recognition · Computer Science 2019-08-23 Jyoti Aneja , Harsh Agrawal , Dhruv Batra , Alexander Schwing

Single-cell RNA sequencing (scRNA-seq) enables the study of cellular heterogeneity. Yet, clustering accuracy, and with it downstream analyses based on cell labels, remain challenging due to measurement noise and biological variability. In…

Machine Learning · Computer Science 2026-03-03 Dominik Meier , Shixing Yu , Sagnik Nandy , Promit Ghosal , Kyra Gan

Multi-View Clustering (MVC) has gained significant attention for its ability to leverage complementary information across diverse views. However, existing deep MVC methods often struggle with view-distribution entanglement during cross-view…

Computer Vision and Pattern Recognition · Computer Science 2026-05-18 Xin Zou , Ruimeng Liu , Chang Tang , Zhenglai Li , Xinwang Liu , Kunlun He , Wanqing Li

Accurate and robust prediction of patient's response to drug treatments is critical for developing precision medicine. However, it is often difficult to obtain a sufficient amount of coherent drug response data from patients directly for…

Machine Learning · Computer Science 2021-02-02 Di He , Lei Xie

This paper introduces Associative Compression Networks (ACNs), a new framework for variational autoencoding with neural networks. The system differs from existing variational autoencoders (VAEs) in that the prior distribution used to model…

Neural and Evolutionary Computing · Computer Science 2018-04-27 Alex Graves , Jacob Menick , Aaron van den Oord

We present a principled approach to incorporating labels in VAEs that captures the rich characteristic information associated with those labels. While prior work has typically conflated these by learning latent variables that directly…

Machine Learning · Computer Science 2022-12-19 Tom Joy , Sebastian M. Schmon , Philip H. S. Torr , N. Siddharth , Tom Rainforth

Masked image modeling has been demonstrated as a powerful pretext task for generating robust representations that can be effectively generalized across multiple downstream tasks. Typically, this approach involves randomly masking patches…

Computer Vision and Pattern Recognition · Computer Science 2024-02-29 Neelu Madan , Nicolae-Catalin Ristea , Kamal Nasrollahi , Thomas B. Moeslund , Radu Tudor Ionescu

We present a new supervised learning technique for the Variational AutoEncoder (VAE) that allows it to learn a causally disentangled representation and generate causally disentangled outcomes simultaneously. We call this approach Causally…

Machine Learning · Statistics 2023-10-10 Seunghwan An , Kyungwoo Song , Jong-June Jeon