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Intercellular heterogeneity serves as both a confounding factor in studying individual clones and an information source in characterizing any heterogeneous tissues, such as blood, tumor systems. Due to inevitable sequencing errors and other…

Genomics · Quantitative Biology 2014-09-30 Guoqiang Yu , Roger R. Wang , Sean S. Wang , Niya Wang , Yue Wang

Logging, the practice of inserting log statements into source code, is critical for improving software reliability. Recently, language model-based techniques have been developed to automate log statement generation based on input code.…

Software Engineering · Computer Science 2025-04-03 Boyin Tan , Junjielong Xu , Zhouruixing Zhu , Pinjia He

Deobfuscating binary code remains a fundamental challenge in reverse engineering, as obfuscation is widely used to hinder analysis and conceal program logic. Although large language models (LLMs) have shown promise in recovering semantics…

Software Engineering · Computer Science 2026-04-10 Li Hu , Xiuwei Shang , Jieke Shi , Shaoyin Cheng , Junqi Zhang , Gangyang Li , Zhou Yang , Weiming Zhang , David Lo

The BigScience Workshop was a value-driven initiative that spanned one and half years of interdisciplinary research and culminated in the creation of ROOTS, a 1.6TB multilingual dataset that was used to train BLOOM, one of the largest…

Computers and Society · Computer Science 2022-12-12 Christopher Akiki , Giada Pistilli , Margot Mieskes , Matthias Gallé , Thomas Wolf , Suzana Ilić , Yacine Jernite

Having similar code fragments, also called clones, in software systems can lead to unnecessary comprehension, review and change efforts. Syntactically similar clones can often be encountered in practice. The same is not clear for only…

Software Engineering · Computer Science 2018-05-23 Verena Käfer , Stefan Wagner , Rainer Koschke

Dataset Condensation is a newly emerging technique aiming at learning a tiny dataset that captures the rich information encoded in the original dataset. As the size of datasets contemporary machine learning models rely on becomes…

Machine Learning · Computer Science 2022-10-18 Justin Cui , Ruochen Wang , Si Si , Cho-Jui Hsieh

Large language models are increasingly deployed to simulate patients for clinical training, research, and mental health tools, yet population-level validity remains largely untested. We introduce PsychBench, the first epidemiological audit…

Computers and Society · Computer Science 2026-04-21 Patrick Keough

Concept Bottleneck Models (CBMs) route predictions exclusively through a clinically grounded concept layer, binding interpretability to concept-label consistency. When a dataset contains concept-level inconsistencies, identical concept…

Machine Learning · Computer Science 2026-04-22 Gonzalo Nápoles , Isel Grau , Yamisleydi Salgueiro

The occurrence of similar code, or `code clones', can make program code difficult to read, modify and maintain. This paper describes industrial case studies of clone detection and elimination using a refactoring and clone detection tool. We…

Software Engineering · Computer Science 2017-04-03 Simon Thompson , Huiqing Li , Andreas Schumacher

As large language models (LLMs) become integral to code-related tasks, a central question emerges: Do LLMs truly understand program semantics? We introduce EquiBench, a new benchmark for evaluating LLMs through equivalence checking, i.e.,…

Machine Learning · Computer Science 2025-09-23 Anjiang Wei , Jiannan Cao , Ran Li , Hongyu Chen , Yuhui Zhang , Ziheng Wang , Yuan Liu , Thiago S. F. X. Teixeira , Diyi Yang , Ke Wang , Alex Aiken

As large language models (LLMs) become increasingly capable and widely adopted, benchmarks play a central role in assessing their practical utility. For example, SWE-Bench Verified has emerged as a critical benchmark for evaluating LLMs'…

Artificial Intelligence · Computer Science 2025-12-02 Shanchao Liang , Spandan Garg , Roshanak Zilouchian Moghaddam

Typographic attacks exploit the interplay between text and visual content in multimodal foundation models, causing misclassifications when misleading text is embedded within images. Existing datasets are limited in size and diversity,…

Computer Vision and Pattern Recognition · Computer Science 2026-03-19 Justus Westerhoff , Erblina Purelku , Jakob Hackstein , Jonas Loos , Leo Pinetzki , Erik Rodner , Lorenz Hufe

The diversity of programming languages is growing, making the language extensibility of code clone detectors crucial. However, this is challenging for most existing clone detection detectors because the source code handler needs…

Software Engineering · Computer Science 2024-09-18 Wenqing Zhu , Norihiro Yoshida , Toshihiro Kamiya , Eunjong Choi , Hiroaki Takada

With the expanding application of Large Language Models (LLMs) in various domains, it becomes imperative to comprehensively investigate their unforeseen behaviors and consequent outcomes. In this study, we introduce and systematically…

Computation and Language · Computer Science 2024-04-22 Yuxi Li , Yi Liu , Gelei Deng , Ying Zhang , Wenjia Song , Ling Shi , Kailong Wang , Yuekang Li , Yang Liu , Haoyu Wang

Research in AI4Science has shown promise in many science applications, including polymer design. However, current LLMs are ineffective in this problem space because: (i) most models lack polymer-specific knowledge, and (ii) existing aligned…

Computation and Language · Computer Science 2026-05-28 Dikshya Mohanty , Mohammad Saqib Hasan , Syed Mostofa Monsur , Size Zheng , Benjamin Hsiao , Niranjan Balasubramanian

Multimodal large language models have unlocked new possibilities for various multimodal tasks. However, their potential in image manipulation detection remains unexplored. When directly applied to the IMD task, M-LLMs often produce…

Computer Vision and Pattern Recognition · Computer Science 2025-12-30 Zhihao Sun , Haoran Jiang , Haoran Chen , Yixin Cao , Xipeng Qiu , Zuxuan Wu , Yu-Gang Jiang

Amid the expanding use of pre-training data, the phenomenon of benchmark dataset leakage has become increasingly prominent, exacerbated by opaque training processes and the often undisclosed inclusion of supervised data in contemporary…

Computation and Language · Computer Science 2024-04-30 Ruijie Xu , Zengzhi Wang , Run-Ze Fan , Pengfei Liu

Large Language Models (LLMs) and Large Multimodal Models (LMMs) demonstrate impressive problem-solving skills in many tasks and domains. However, their ability to reason with complex images in academic domains has not been systematically…

Multimedia · Computer Science 2025-10-01 Chenghao Ma , Haihong E. , Junpeng Ding , Jun Zhang , Ziyan Ma , Huang Qing , Bofei Gao , Liang Chen , Yifan Zhu , Meina Song

Modern software relies on a multitude of automated testing and quality assurance tools to prevent errors, bugs and potential vulnerabilities. This study sets out to provide a head-to-head, quantitative and qualitative evaluation of six…

Software Engineering · Computer Science 2025-08-07 Damian Gnieciak , Tomasz Szandala

Identifying suitable datasets for a research question remains challenging because existing dataset search engines rely heavily on metadata quality and keyword overlap, which often fail to capture the semantic intent of scientific…

Digital Libraries · Computer Science 2026-01-09 Zhiyin Tan , Changxu Duan
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