Related papers: Binary Reconstruction Codes for Correcting One Del…
Recent experiments have demonstrated the feasibility of storing digital information in macromolecules such as DNA and protein. However, the DNA storage channel is prone to errors such as deletions, insertions, and substitutions. During the…
An insdel refers to a deletion or an insertion, and an edit refers to an insdel or a substitution. In this paper, we consider the segmented single-insdel (resp. single-edit) channel, where the channel's input bit stream is partitioned into…
Motivated by polymer-based data-storage platforms that use chains of binary synthetic polymers as the recording media and read the content via tandem mass spectrometers, we propose a new family of codes that allows for both unique string…
Consider a length-$n$ sequence $\bm{x}$ over a $q$-ary alphabet. The \emph{fixed-length Levenshtein ball} $\mathcal{L}_t(\bm{x})$ of radius $t$ encompasses all length-$n$ $q$-ary sequences that can be derived from $\bm{x}$ by performing $t$…
Binary code similarity detection is to detect the similarity of code at binary (assembly) level without source code. Existing works have their limitations when dealing with mutated binary code generated by different compiling options. In…
This paper studies the problem of constructing codes correcting deletions in arrays. Under this model, it is assumed that an $n\times n$ array can experience deletions of rows and columns. These deletion errors are referred to as…
Function-correcting codes are a class of codes designed to protect the function evaluation of a message against errors whose key advantage is the reduced redundancy. In this paper, we extend function-correcting codes from binary symmetric…
This paper extends the foundational work of Dollma \emph{et al}. on codes for ordered composite DNA sequences. We consider the general setting with an alphabet of size $q$ and a resolution parameter $k$, moving beyond the binary ($q=2$)…
Permutation codes in the Ulam metric, which can correct multiple deletions, have been investigated extensively recently. In this work, we are interested in the maximum size of permutation codes in the Ulam metric and aim to design…
Motivated by applications in DNA-based storage and communication systems, we study deletion and insertion errors simultaneously in a burst. In particular, we study a type of error named $t$-deletion-$s$-insertion-burst ($(t,s)$-burst for…
Motivated by DNA-based storage applications, we study the problem of reconstructing a coded sequence from multiple traces. We consider the model where the traces are outputs of independent deletion channels, where each channel deletes each…
Using the idea of interference alignment, Suh and Ramchandran constructed a class of minimum-storage regenerating codes which can repair one systematic or one parity-check node with optimal repair bandwidth. With the same code structure, we…
The problem of correcting deletions and insertions has recently received significantly increased attention due to the DNA-based data storage technology, which suffers from deletions and insertions with extremely high probability. In this…
A code construction and repair scheme for optimal functional regeneration of multiple node failures is presented, which is based on stitching together short MDS codes on carefully chosen sets of points lying on a linearized polynomial. The…
A covering code is a set of codewords with the property that the union of balls, suitably defined, around these codewords covers an entire space. Generally, the goal is to find the covering code with the minimum size codebook. While most…
This paper addresses fundamental challenges in two-dimensional error correction by constructing optimal codes for \emph{criss-cross deletions}. We consider an $ n \times n $ array $\boldsymbol{X}$ over a $ q $-ary alphabet $\Sigma_q := \{0,…
Batch codes are a family of codes that represent a distributed storage system (DSS) of $n$ nodes so that any batch of $t$ data symbols can be retrieved by reading at most one symbol from each node. Fractional repetition codes are a family…
We consider the problem of constructing codes that can correct $\delta$ deletions occurring in an arbitrary binary string of length $n$ bits. Varshamov-Tenengolts (VT) codes can correct all possible single deletions $(\delta=1)$ with an…
Based on a sufficient condition proposed by Hollmann and Xiang for constructing triple-error-correcting codes, the minimum distance of a binary cyclic code $\mathcal{C}_{1,3,13}$ with three zeros $\alpha$, $\alpha^3$, and $\alpha^{13}$ of…
The sequence reconstruction problem involves a model where a sequence is transmitted over several identical channels. This model investigates the minimum number of channels required for the unique reconstruction of the transmitted sequence.…