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Graph neural networks (GNNs) are widely applied in graph data modeling. However, existing GNNs are often trained in a task-driven manner that fails to fully capture the intrinsic nature of the graph structure, resulting in sub-optimal node…

Machine Learning · Computer Science 2024-07-17 Zhenhua Huang , Kunhao Li , Shaojie Wang , Zhaohong Jia , Wentao Zhu , Sharad Mehrotra

Link prediction is a fundamental problem in many graph based applications, such as protein-protein interaction prediction. Graph neural network (GNN) has recently been widely used for link prediction. However, existing GNN based link…

Machine Learning · Computer Science 2023-03-02 Kai-Lang Yao , Wu-Jun Li

Graph Neural Networks (GNNs) are a new and increasingly popular family of deep neural network architectures to perform learning on graphs. Training them efficiently is challenging due to the irregular nature of graph data. The problem…

Machine Learning · Computer Science 2021-06-15 Marco Serafini , Hui Guan

Although Large Language Models (LLMs) have demonstrated remarkable progress, their proficiency in graph-related tasks remains notably limited, hindering the development of truly general-purpose models. Previous attempts, including…

Machine Learning · Computer Science 2025-08-20 Xiaojun Guo , Ang Li , Yifei Wang , Stefanie Jegelka , Yisen Wang

The advent of Large Language Models (LLMs) has fundamentally reshaped the way we interact with graphs, giving rise to a new paradigm called GraphLLM. As revealed in recent studies, graph learning can benefit from LLMs. However, we observe…

Machine Learning · Computer Science 2026-04-21 Hongyu Zhan , Qixin Wang , Yusen Tan , Haitao Yu , Jingbo Zhou , Shuai Chen , Jia Li , Xiao Tan , Jun Xia

Large Language Models (LLMs) for Graph Reasoning have been extensively studied over the past two years, involving enabling LLMs to understand graph structures and reason on graphs to solve various graph problems, with graph algorithm…

Artificial Intelligence · Computer Science 2025-10-03 Yuwei Hu , Xinyi Huang , Zhewei Wei , Yongchao Liu , Chuntao Hong

Can we combine heterogenous graph structure with text to learn high-quality semantic and behavioural representations? Graph neural networks (GNN)s encode numerical node attributes and graph structure to achieve impressive performance in a…

Machine Learning · Computer Science 2022-06-23 Vassilis N. Ioannidis , Xiang Song , Da Zheng , Houyu Zhang , Jun Ma , Yi Xu , Belinda Zeng , Trishul Chilimbi , George Karypis

Large language models (LLMs) such as GPT-4 have emerged as frontrunners, showcasing unparalleled prowess in diverse applications, including answering queries, code generation, and more. Parallelly, graph-structured data, an intrinsic data…

Artificial Intelligence · Computer Science 2023-11-14 Shirui Pan , Yizhen Zheng , Yixin Liu

Recently, large language models (LLMs) have demonstrated superior capabilities in understanding and zero-shot learning on textual data, promising significant advances for many text-related domains. In the graph domain, various real-world…

Computation and Language · Computer Science 2024-02-21 Xuanwen Huang , Kaiqiao Han , Yang Yang , Dezheng Bao , Quanjin Tao , Ziwei Chai , Qi Zhu

Graph plays a significant role in representing and analyzing complex relationships in real-world applications such as citation networks, social networks, and biological data. Recently, Large Language Models (LLMs), which have achieved…

Machine Learning · Computer Science 2024-04-25 Yuhan Li , Zhixun Li , Peisong Wang , Jia Li , Xiangguo Sun , Hong Cheng , Jeffrey Xu Yu

Large Language Models (LLMs) have achieved great success in various reasoning tasks. In this work, we focus on the graph reasoning ability of LLMs. Although theoretical studies proved that LLMs are capable of handling graph reasoning tasks,…

Computation and Language · Computer Science 2025-01-09 Xinnan Dai , Qihao Wen , Yifei Shen , Hongzhi Wen , Dongsheng Li , Jiliang Tang , Caihua Shan

The integration of multi-omic data is pivotal for understanding complex diseases, but its high dimensionality and noise present significant challenges. Graph Neural Networks (GNNs) offer a robust framework for analyzing large-scale…

Quantitative Methods · Quantitative Biology 2024-12-23 Heming Zhang , Di Huang , Yixin Chen , Fuhai Li

Graph neural networks (GNNs) have emerged as a powerful model to capture critical graph patterns. Instead of treating them as black boxes in an end-to-end fashion, attempts are arising to explain the model behavior. Existing works mainly…

Machine Learning · Computer Science 2024-02-22 Yi Nian , Yurui Chang , Wei Jin , Lu Lin

Vision-Language Models (VLMs) have demonstrated remarkable capabilities in aligning and understanding multimodal signals, yet their potential to reason over structured data, where multimodal entities are connected through explicit…

Computer Vision and Pattern Recognition · Computer Science 2026-03-17 Jiajin Liu , Dongzhe Fan , Chuanhao Ji , Daochen Zha , Qiaoyu Tan

Graph neural networks (GNNs) have become the preferred models for node classification in graph data due to their robust capabilities in integrating graph structures and attributes. However, these models heavily depend on a substantial…

Machine Learning · Computer Science 2025-05-19 Taiyan Zhang , Renchi Yang , Yurui Lai , Mingyu Yan , Xiaochun Ye , Dongrui Fan

Large language models (LLMs) have been demonstrated to possess the capabilities to understand fundamental graph properties and address various graph reasoning tasks. Existing methods fine-tune LLMs to understand and execute graph reasoning…

Machine Learning · Computer Science 2024-12-18 Rongzheng Wang , Shuang Liang , Qizhi Chen , Jiasheng Zhang , Ke Qin

The adoption of Large Language Models (LLMs) is rapidly expanding across various tasks that involve inherent graphical structures. Graphs are integral to a wide range of applications, including motion planning for autonomous vehicles,…

Artificial Intelligence · Computer Science 2025-03-17 Piyush Gupta , Sangjae Bae , David Isele

The integration of Large Language Models (LLMs) with Graph Neural Networks (GNNs) has recently been explored to enhance the capabilities of Text Attribute Graphs (TAGs). Most existing methods feed textual descriptions of the graph structure…

Computation and Language · Computer Science 2025-04-03 Zhaoxing Li , Xiaoming Zhang , Haifeng Zhang , Chengxiang Liu

The emergent reasoning capabilities of Large Language Models (LLMs) offer a transformative paradigm for analyzing text-attributed graphs. While instruction tuning is the prevailing method for adapting pre-trained LLMs to graph learning…

Machine Learning · Computer Science 2026-01-21 Zixing Song , Irwin King

Text-attributed graphs have recently garnered significant attention due to their wide range of applications in web domains. Existing methodologies employ word embedding models for acquiring text representations as node features, which are…

Machine Learning · Computer Science 2024-12-11 Jianxiang Yu , Yuxiang Ren , Chenghua Gong , Jiaqi Tan , Xiang Li , Xuecang Zhang