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Graph Neural Networks (GNNs) are often used for tasks involving the 3D geometry of a given graph, such as molecular dynamics simulation. While incorporating Euclidean distance into Message Passing Neural Networks (referred to as Vanilla…

Machine Learning · Computer Science 2024-10-22 Zian Li , Xiyuan Wang , Yinan Huang , Muhan Zhang

Anomaly detection on text-rich graphs is widely prevalent in real life, such as detecting incorrectly assigned academic papers to authors and detecting bots in social networks. The remarkable capabilities of large language models (LLMs)…

Computation and Language · Computer Science 2025-08-08 Yunhe Pang , Bo Chen , Fanjin Zhang , Yanghui Rao , Evgeny Kharlamov , Jie Tang

This report evaluates the efficiency of Graph Edit Distance (GED) computation for graph similarity search, comparing Cascading Metric Trees (CMT) with brute-force verification. Despite the anticipated advantages of CMT, our findings…

Databases · Computer Science 2024-05-29 Wenqi Marshall Guo , Jeffrey Uhlmann

Dynamic Time Warping (DTW) and Geometric Edit Distance (GED) are basic similarity measures between curves or general temporal sequences (e.g., time series) that are represented as sequences of points in some metric space $(X,…

Data Structures and Algorithms · Computer Science 2020-01-29 Omer Gold , Micha Sharir

Geodesic distances on manifolds have numerous applications in image processing, computer graphics and computer vision. In this work, we introduce an approach called `LGGD' (Learned Generalized Geodesic Distances). This method involves…

Machine Learning · Computer Science 2025-03-10 Amitoz Azad , Yuan Fang

High-level synthesis (HLS) tools offer limited support for Engineering Change Orders (ECOs), making late-stage design modifications challenging and costly. This paper introduces a graph-based ECO methodology tailored for Google XLS. A Graph…

Software Engineering · Computer Science 2026-04-17 Alireza Azadi , Paul Rigge , Ethan Mahintorabi , Kenneth B. Kent

In this paper, we propose an end-to-end graph learning framework, namely Deep Iterative and Adaptive Learning for Graph Neural Networks (DIAL-GNN), for jointly learning the graph structure and graph embeddings simultaneously. We first cast…

Machine Learning · Computer Science 2019-12-18 Yu Chen , Lingfei Wu , Mohammed J. Zaki

Recently, more and more research has focused on using Graph Neural Networks (GNN) to solve the Graph Similarity Computation problem (GSC), i.e., computing the Graph Edit Distance (GED) between two graphs. These methods treat GSC as an…

Artificial Intelligence · Computer Science 2023-08-29 Jiaxi Lv , Liang Zhang , Yi Huang , Jiancheng Huang , Shifeng Chen

Graph neural networks (GNNs) have shown significant success in learning graph representations. However, recent studies reveal that GNNs often fail to outperform simple MLPs on heterophilous graph tasks, where connected nodes may differ in…

Machine Learning · Computer Science 2025-04-10 Songwei Zhao , Yuan Jiang , Zijing Zhang , Yang Yu , Hechang Chen

Graph unlearning has emerged as a pivotal research area for ensuring privacy protection, given the widespread adoption of Graph Neural Networks (GNNs) in applications involving sensitive user data. Among existing studies, certified graph…

Machine Learning · Computer Science 2025-02-19 Lu Yi , Zhewei Wei

In this paper, we leverage the properties of non-Euclidean Geometry to define the Geodesic distance (GD) on the space of statistical manifolds. The Geodesic distance is a real and intuitive similarity measure that is a good alternative to…

Computer Vision and Pattern Recognition · Computer Science 2021-06-29 Zakariae Abbad , Ahmed Drissi El Maliani , Said Ouatik El Alaoui , Mohammed El Hassouni

Graph Machine Learning (GML) has numerous applications, such as node/graph classification and link prediction, in real-world domains. Providing human-understandable explanations for GML models is a challenging yet fundamental task to foster…

Machine Learning · Computer Science 2023-08-04 Claudio Borile , Alan Perotti , André Panisson

Graph Structure Learning (GSL) focuses on capturing intrinsic dependencies and interactions among nodes in graph-structured data by generating novel graph structures. Graph Neural Networks (GNNs) have emerged as promising GSL solutions,…

Machine Learning · Computer Science 2025-03-11 Zirui Guo , Lianghao Xia , Yanhua Yu , Yuling Wang , Kangkang Lu , Zhiyong Huang , Chao Huang

Metric data plays an important role in various settings such as metric-based indexing, clustering, classification, and approximation algorithms in general. Due to measurement error, noise, or an inability to completely gather all the data,…

Computational Geometry · Computer Science 2018-07-24 Chenglin Fan , Benjamin Raichel , Gregory Van Buskirk

Learning graph generative models over latent spaces has received less attention compared to models that operate on the original data space and has so far demonstrated lacklustre performance. We present GLAD a latent space graph generative…

Machine Learning · Computer Science 2025-02-18 Van Khoa Nguyen , Yoann Boget , Frantzeska Lavda , Alexandros Kalousis

Graph Drawing techniques have been developed in the last few years with the purpose of producing aesthetically pleasing node-link layouts. Recently, the employment of differentiable loss functions has paved the road to the massive usage of…

Machine Learning · Computer Science 2022-07-04 Matteo Tiezzi , Gabriele Ciravegna , Marco Gori

Graph neural networks (GNNs) learn to represent nodes by aggregating information from their neighbors. As GNNs increase in depth, their receptive field grows exponentially, leading to high memory costs. Several existing methods address this…

Machine Learning · Computer Science 2025-07-16 Taraneh Younesian , Daniel Daza , Emile van Krieken , Thiviyan Thanapalasingam , Peter Bloem

Measuring similarity between complex objects is a fundamental task in many scientific fields. When objects are represented as graphs, graph similarity/distance measures offer a powerful framework for quantifying structural resemblance.…

Combinatorics · Mathematics 2025-09-30 Matthias Dehmer , Izudin Redžepović , Niko Tratnik , Petra Žigert Pleteršek

We present Graph Random Neural Features (GRNF), a novel embedding method from graph-structured data to real vectors based on a family of graph neural networks. The embedding naturally deals with graph isomorphism and preserves the metric…

Machine Learning · Computer Science 2020-06-03 Daniele Zambon , Cesare Alippi , Lorenzo Livi

The computation of distance measures between nodes in graphs is inefficient and does not scale to large graphs. We explore dense vector representations as an effective way to approximate the same information: we introduce a simple yet…

Computation and Language · Computer Science 2019-06-18 Andrey Kutuzov , Mohammad Dorgham , Oleksiy Oliynyk , Chris Biemann , Alexander Panchenko